U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC114827864 VISTA enhancer hs2565 [ Homo sapiens (human) ]

Gene ID: 114827864, updated on 15-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
LOC114827864
Gene description
VISTA enhancer hs2565
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
PROVISIONAL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This locus represents a conserved genomic element that can function as an enhancer. It can activate a Hsp68 promoter coupled to a LacZ reporter gene in transgenic mice. [provided by RefSeq, Jun 2015]
Orthologs
mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 20
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 20 NC_000020.11 (57155027..57159433)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 20 NC_060944.1 (58932827..58937232)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 20 NC_000020.10 (55730083..55734489)

Chromosome 20 - NC_000020.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105372683 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:55570502-55571030 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:55578655-55579522 Neighboring gene ReSE screen-validated silencer GRCh37_chr20:55589742-55589905 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:55604837-55605336 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:55619775-55620276 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:55640151-55640652 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr20:55646149-55646712 Neighboring gene uncharacterized LOC105372685 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:55707263-55707764 Neighboring gene uncharacterized LOC105372686 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:55736368-55736868 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:55747859-55748360 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:55758285-55758807 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:55758808-55759329 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:55773380-55774038 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:55774039-55774698 Neighboring gene bone morphogenetic protein 7 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr20:55780300-55781499 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:55798567-55799068 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:55801141-55801641 Neighboring gene BMP7 antisense RNA 1 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr20:55806824-55807357 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr20:55807358-55807890 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:55819232-55820156 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:55834429-55834991 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:55837926-55838642 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:55839361-55840076 Neighboring gene BMP7 promoter region Neighboring gene translation initiation factor IF-2-like

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. VISTA Enhancer Browser--a database of tissue-specific human enhancers. Visel A, et al. Nucleic Acids Res, 2007 Jan. PMID 17130149, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

Go to the top of the page Help

Review eQTL and phenotype association data in this region using PheGenI

Variation

Go to the top of the page Help

See variants in ClinVar

See Variation Viewer (GRCh37.p13)

General gene information

Go to the top of the page Help

Homology

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_065220.1 

    Range
    101..4507
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000020.11 Reference GRCh38.p14 Primary Assembly

    Range
    57155027..57159433
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060944.1 Alternate T2T-CHM13v2.0

    Range
    58932827..58937232
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases