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LOC114953754 protein snail homolog Sna [ Acropora millepora ]

Gene ID: 114953754, updated on 30-Nov-2023

Summary

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Gene symbol
LOC114953754
Gene description
protein snail homolog Sna
See related
EnsemblRapid:LOC114953754
Gene type
protein coding
RefSeq status
MODEL
Organism
Acropora millepora
Lineage
Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Scleractinia; Astrocoeniina; Acroporidae; Acropora
Also known as
snail
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Genomic context

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See LOC114953754 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
2
Annotation release Status Assembly Chr Location
101 current Amil_v2.1 (GCF_013753865.1) 10 NC_058075.1 (3029396..3031864)
100 previous assembly amil_sf_1.1 (GCF_004143615.1) Unplaced Scaffold NW_021126395.1 (1121818..1124294, complement)

Chromosome 10 - NC_058075.1Genomic Context describing neighboring genes Neighboring gene monoglyceride lipase-like Neighboring gene beta-hexosaminidase 1-like Neighboring gene B-cell receptor-associated protein 31-like Neighboring gene striatin-interacting protein 1-like Neighboring gene uncharacterized LOC114953756 Neighboring gene contactin-6-like Neighboring gene inactive histone-lysine N-methyltransferase 2E-like Neighboring gene uncharacterized LOC114953656

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. snail expression during embryonic development of the coral Acropora: blurring the diploblast/triploblast divide? Hayward DC, et al. Dev Genes Evol, 2004 May. PMID 15029498
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein snail homolog Sna
Names
zinc finger transcription factor

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Acropora millepora Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Amil_v2.1

Genomic

  1. NC_058075.1 Reference Amil_v2.1

    Range
    3029396..3031864
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029330111.2 → XP_029185944.1  protein snail homolog Sna

    UniProtKB/TrEMBL
    Q6JBR3
    Related
    XP_029185944.1, XM_029330111.2
    Conserved Domains (5) summary
    COG5189
    Location:89 → 233
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    sd00017
    Location:184 → 204
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam15909
    Location:181 → 263
    zf-C2H2_8; C2H2-type zinc ribbon
    pfam00096
    Location:210 → 232
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:197 → 220
    zf-H2C2_2; Zinc-finger double domain
Nucleotide Protein
Heading Accession and Version

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