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slc8a1b solute carrier family 8 member 1b [ Echeneis naucrates (live sharksucker) ]

Gene ID: 115055884, updated on 17-Mar-2024

Summary

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Gene symbol
slc8a1b
Gene description
solute carrier family 8 member 1b
See related
Ensembl:ENSENLG00000002478
Gene type
protein coding
RefSeq status
MODEL
Organism
Echeneis naucrates
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangiformes; Echeneidae; Echeneis
Also known as
slc8a1
Orthologs
zebrafish all
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Genomic context

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See slc8a1b in Genome Data Viewer
Location:
chromosome: 15
Exon count:
12
Annotation release Status Assembly Chr Location
100 current fEcheNa1.1 (GCF_900963305.1) 15 NC_042525.1 (15016865..15125214)

Chromosome 15 - NC_042525.1Genomic Context describing neighboring genes Neighboring gene mal, T cell differentiation protein like Neighboring gene mitochondrial ribosomal protein S5 Neighboring gene uncharacterized LOC115055885 Neighboring gene uncharacterized LOC115055883 Neighboring gene THUMP domain containing 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_042525.1 Chromosome 15 Reference fEcheNa1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium:sodium antiporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in calcium ion import across plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell communication IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sodium ion transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in axon IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in postsynapse IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sodium/calcium exchanger 1
Names
solute carrier family 8 member A1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Echeneis naucrates Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fEcheNa1.1 Primary Assembly

Genomic

  1. NC_042525.1 Reference fEcheNa1.1 Primary Assembly

    Range
    15016865..15125214
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029521948.1 → XP_029377808.1  sodium/calcium exchanger 1 isoform X2

    UniProtKB/TrEMBL
    A0A665TE19
    Related
    ENSENLP00000005198.1, ENSENLT00000005462.1
    Conserved Domains (1) summary
    TIGR00845
    Location:32 → 945
    caca; sodium/calcium exchanger 1

  2. XM_029521947.1 → XP_029377807.1  sodium/calcium exchanger 1 isoform X1

    UniProtKB/TrEMBL
    A0A665TDX9, A0A665TGM7
    Related
    ENSENLP00000005158.1, ENSENLT00000005422.1
Nucleotide Protein
Heading Accession and Version

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