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CHKA choline kinase alpha [ Rhinatrema bivittatum (two-lined caecilian) ]

Gene ID: 115079555, updated on 17-Mar-2024

Summary

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Gene symbol
CHKA
Gene description
choline kinase alpha
Gene type
protein coding
RefSeq status
MODEL
Organism
Rhinatrema bivittatum
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Gymnophiona; Rhinatrematidae; Rhinatrema
Orthologs
human mouse all
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Genomic context

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See CHKA in Genome Data Viewer
Location:
chromosome: 17
Exon count:
12
Annotation release Status Assembly Chr Location
100 current aRhiBiv1.1 (GCF_901001135.1) 17 NC_042631.1 (52321292..52575208, complement)

Chromosome 17 - NC_042631.1Genomic Context describing neighboring genes Neighboring gene transfer RNA alanine (anticodon AGC) Neighboring gene protein-glucosylgalactosylhydroxylysine glucosidase Neighboring gene synaptotagmin-2-like Neighboring gene uncharacterized LOC115079513 Neighboring gene histone-lysine N-methyltransferase KMT5B-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_042631.1 Chromosome 17 Reference aRhiBiv1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Multi-tissue transcriptomes of caecilian amphibians highlight incomplete knowledge of vertebrate gene families. Torres-Sánchez M, et al. DNA Res, 2019 Feb 1. PMID 30351380, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables choline kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ethanolamine kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in CDP-choline pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in phosphatidylethanolamine biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
choline kinase alpha

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Rhinatrema bivittatum Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference aRhiBiv1.1 Primary Assembly

Genomic

  1. NC_042631.1 Reference aRhiBiv1.1 Primary Assembly

    Range
    52321292..52575208 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029583212.1 → XP_029439072.1  choline kinase alpha isoform X2

    Conserved Domains (1) summary
    cd05156
    Location:79 → 401
    ChoK_euk; Euykaryotic Choline Kinase

  2. XM_029583211.1 → XP_029439071.1  choline kinase alpha isoform X1

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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