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PRDM6 PR/SET domain 6 [ Rhinatrema bivittatum (two-lined caecilian) ]

Gene ID: 115100840, updated on 17-Mar-2024

Summary

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Gene symbol
PRDM6
Gene description
PR/SET domain 6
Gene type
protein coding
RefSeq status
MODEL
Organism
Rhinatrema bivittatum
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Gymnophiona; Rhinatrematidae; Rhinatrema
Orthologs
human mouse all
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Genomic context

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See PRDM6 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
10
Annotation release Status Assembly Chr Location
100 current aRhiBiv1.1 (GCF_901001135.1) 1 NC_042615.1 (602191426..602510187, complement)

Chromosome 1 - NC_042615.1Genomic Context describing neighboring genes Neighboring gene casein kinase 1 gamma 3 Neighboring gene centrosomal protein 120 Neighboring gene peptidylprolyl isomerase C Neighboring gene sorting nexin 24

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_042615.1 Chromosome 1 Reference aRhiBiv1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Multi-tissue transcriptomes of caecilian amphibians highlight incomplete knowledge of vertebrate gene families. Torres-Sánchez M, et al. DNA Res, 2019 Feb 1. PMID 30351380, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables histone methyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
putative histone-lysine N-methyltransferase PRDM6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Rhinatrema bivittatum Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference aRhiBiv1.1 Primary Assembly

Genomic

  1. NC_042615.1 Reference aRhiBiv1.1 Primary Assembly

    Range
    602191426..602510187 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029619843.1 → XP_029475703.1  putative histone-lysine N-methyltransferase PRDM6 isoform X5

  2. XM_029619808.1 → XP_029475668.1  putative histone-lysine N-methyltransferase PRDM6 isoform X1

  3. XM_029619817.1 → XP_029475677.1  putative histone-lysine N-methyltransferase PRDM6 isoform X2

  4. XM_029619825.1 → XP_029475685.1  putative histone-lysine N-methyltransferase PRDM6 isoform X3

    Conserved Domains (4) summary
    sd00017
    Location:462 → 482
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:488 → 510
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:474 → 498
    zf-H2C2_2; Zinc-finger double domain
    cd19191
    Location:184 → 312
    PR-SET_PRDM6; PR-SET domain found in PR domain zinc finger protein 6 (PRDM6) and similar proteins

  5. XM_029619835.1 → XP_029475695.1  putative histone-lysine N-methyltransferase PRDM6 isoform X4

    Conserved Domains (4) summary
    sd00017
    Location:462 → 482
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:488 → 510
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:474 → 498
    zf-H2C2_2; Zinc-finger double domain
    cd19191
    Location:184 → 312
    PR-SET_PRDM6; PR-SET domain found in PR domain zinc finger protein 6 (PRDM6) and similar proteins
Nucleotide Protein
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