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SNCAIP synuclein alpha interacting protein [ Rhinatrema bivittatum (two-lined caecilian) ]

Gene ID: 115100906, updated on 17-Mar-2024

Summary

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Gene symbol
SNCAIP
Gene description
synuclein alpha interacting protein
Gene type
protein coding
RefSeq status
MODEL
Organism
Rhinatrema bivittatum
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Gymnophiona; Rhinatrematidae; Rhinatrema
Orthologs
human mouse all
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Genomic context

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See SNCAIP in Genome Data Viewer
Location:
chromosome: 1
Exon count:
15
Annotation release Status Assembly Chr Location
100 current aRhiBiv1.1 (GCF_901001135.1) 1 NC_042615.1 (603718049..604038096, complement)

Chromosome 1 - NC_042615.1Genomic Context describing neighboring genes Neighboring gene sorting nexin-2 Neighboring gene uncharacterized LOC115100901 Neighboring gene B2 bradykinin receptor-like Neighboring gene zinc finger protein 474-like Neighboring gene uncharacterized LOC115100934 Neighboring gene lysyl oxidase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_042615.1 Chromosome 1 Reference aRhiBiv1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Multi-tissue transcriptomes of caecilian amphibians highlight incomplete knowledge of vertebrate gene families. Torres-Sánchez M, et al. DNA Res, 2019 Feb 1. PMID 30351380, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ubiquitin protein ligase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
synphilin-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Rhinatrema bivittatum Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference aRhiBiv1.1 Primary Assembly

Genomic

  1. NC_042615.1 Reference aRhiBiv1.1 Primary Assembly

    Range
    603718049..604038096 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029619986.1 → XP_029475846.1  synphilin-1 isoform X1

  2. XM_029620002.1 → XP_029475862.1  synphilin-1 isoform X1

  3. XM_029620011.1 → XP_029475871.1  synphilin-1 isoform X2

  4. XM_029619978.1 → XP_029475838.1  synphilin-1 isoform X1

    Conserved Domains (3) summary
    sd00045
    Location:346 → 374
    ANK; ANK repeat [structural motif]
    pfam16700
    Location:504 → 547
    SNCAIP_SNCA_bd; Synphilin-1 alpha-Synuclein-binding domain
    pfam12796
    Location:383 → 479
    Ank_2; Ankyrin repeats (3 copies)

  5. XM_029619993.1 → XP_029475853.1  synphilin-1 isoform X1

Nucleotide Protein
Heading Accession and Version

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