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LOX lysyl oxidase [ Rhinatrema bivittatum (two-lined caecilian) ]

Gene ID: 115100942, updated on 17-Mar-2024

Summary

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Gene symbol
LOX
Gene description
lysyl oxidase
Gene type
protein coding
RefSeq status
MODEL
Organism
Rhinatrema bivittatum
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Gymnophiona; Rhinatrematidae; Rhinatrema
Orthologs
human mouse all
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Genomic context

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See LOX in Genome Data Viewer
Location:
chromosome: 1
Exon count:
7
Annotation release Status Assembly Chr Location
100 current aRhiBiv1.1 (GCF_901001135.1) 1 NC_042615.1 (604491358..604547041)

Chromosome 1 - NC_042615.1Genomic Context describing neighboring genes Neighboring gene B2 bradykinin receptor-like Neighboring gene synuclein alpha interacting protein Neighboring gene zinc finger protein 474-like Neighboring gene uncharacterized LOC115100934 Neighboring gene serum response factor binding protein 1 Neighboring gene proline rich 16

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_042615.1 Chromosome 1 Reference aRhiBiv1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Multi-tissue transcriptomes of caecilian amphibians highlight incomplete knowledge of vertebrate gene families. Torres-Sánchez M, et al. DNA Res, 2019 Feb 1. PMID 30351380, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables copper ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein-lysine 6-oxidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in peptidyl-lysine oxidation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein-lysine 6-oxidase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Rhinatrema bivittatum Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference aRhiBiv1.1 Primary Assembly

Genomic

  1. NC_042615.1 Reference aRhiBiv1.1 Primary Assembly

    Range
    604491358..604547041
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029620061.1 → XP_029475921.1  protein-lysine 6-oxidase isoform X2

  2. XM_029620052.1 → XP_029475912.1  protein-lysine 6-oxidase isoform X1

    Conserved Domains (1) summary
    pfam01186
    Location:245 → 446
    Lysyl_oxidase; Lysyl oxidase
Nucleotide Protein
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