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DPF1 double PHD fingers 1 [ Rhinatrema bivittatum (two-lined caecilian) ]

Gene ID: 115100977, updated on 17-Mar-2024

Summary

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Gene symbol
DPF1
Gene description
double PHD fingers 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Rhinatrema bivittatum
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Gymnophiona; Rhinatrematidae; Rhinatrema
Orthologs
human mouse all
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Genomic context

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See DPF1 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
12
Annotation release Status Assembly Chr Location
100 current aRhiBiv1.1 (GCF_901001135.1) 11 NC_042625.1 (73732712..73800763, complement)

Chromosome 11 - NC_042625.1Genomic Context describing neighboring genes Neighboring gene WD repeat domain 87 Neighboring gene signal induced proliferation associated 1 like 3 Neighboring gene zinc finger FYVE domain-containing protein 1-like Neighboring gene NUMB like endocytic adaptor protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_042625.1 Chromosome 11 Reference aRhiBiv1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Multi-tissue transcriptomes of caecilian amphibians highlight incomplete knowledge of vertebrate gene families. Torres-Sánchez M, et al. DNA Res, 2019 Feb 1. PMID 30351380, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in nervous system development IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of nBAF complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger protein neuro-d4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Rhinatrema bivittatum Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference aRhiBiv1.1 Primary Assembly

Genomic

  1. NC_042625.1 Reference aRhiBiv1.1 Primary Assembly

    Range
    73732712..73800763 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029620109.1 → XP_029475969.1  zinc finger protein neuro-d4 isoform X1

    Conserved Domains (4) summary
    COG5189
    Location:182 → 215
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    cd15530
    Location:306 → 351
    PHD2_d4; PHD finger 2 found in d4 gene family proteins
    cd15690
    Location:248 → 305
    PHD1_DPF1; PHD finger 1 found in D4, zinc and double PHD fingers family 1 (DPF1)
    pfam14051
    Location:13 → 84
    Requiem_N; N-terminal domain of DPF2/REQ

  2. XM_029620110.1 → XP_029475970.1  zinc finger protein neuro-d4 isoform X2

Nucleotide Protein
Heading Accession and Version

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