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IFT81 intraflagellar transport 81 [ Rhinatrema bivittatum (two-lined caecilian) ]

Gene ID: 115100990, updated on 17-Mar-2024

Summary

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Gene symbol
IFT81
Gene description
intraflagellar transport 81
Gene type
protein coding
RefSeq status
MODEL
Organism
Rhinatrema bivittatum
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Gymnophiona; Rhinatrematidae; Rhinatrema
Orthologs
human mouse all
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Genomic context

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See IFT81 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
21
Annotation release Status Assembly Chr Location
100 current aRhiBiv1.1 (GCF_901001135.1) 11 NC_042625.1 (22538100..22679011)

Chromosome 11 - NC_042625.1Genomic Context describing neighboring genes Neighboring gene purinergic receptor P2X 4 Neighboring gene purinergic receptor P2X 7 Neighboring gene uncharacterized LOC115073474 Neighboring gene ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_042625.1 Chromosome 11 Reference aRhiBiv1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Multi-tissue transcriptomes of caecilian amphibians highlight incomplete knowledge of vertebrate gene families. Torres-Sánchez M, et al. DNA Res, 2019 Feb 1. PMID 30351380, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables tubulin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cilium assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intraciliary transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in centrosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cilium IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of intraciliary transport particle B IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
intraflagellar transport protein 81 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Rhinatrema bivittatum Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference aRhiBiv1.1 Primary Assembly

Genomic

  1. NC_042625.1 Reference aRhiBiv1.1 Primary Assembly

    Range
    22538100..22679011
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029620126.1 → XP_029475986.1  intraflagellar transport protein 81 homolog isoform X1

  2. XM_029620125.1 → XP_029475985.1  intraflagellar transport protein 81 homolog isoform X1

    Conserved Domains (2) summary
    PTZ00121
    Location:170 → 660
    PTZ00121; MAEBL; Provisional
    pfam18383
    Location:3 → 126
    IFT81_CH; Intraflagellar transport 81 calponin homology domain

  3. XM_029620128.1 → XP_029475988.1  intraflagellar transport protein 81 homolog isoform X2

  4. XM_029620127.1 → XP_029475987.1  intraflagellar transport protein 81 homolog isoform X1

    Conserved Domains (2) summary
    PTZ00121
    Location:170 → 660
    PTZ00121; MAEBL; Provisional
    pfam18383
    Location:3 → 126
    IFT81_CH; Intraflagellar transport 81 calponin homology domain
Nucleotide Protein
Heading Accession and Version

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