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LOC115415779 triosephosphate isomerase [ Sphaeramia orbicularis (orbiculate cardinalfish) ]

Gene ID: 115415779, updated on 23-Oct-2023

Summary

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Gene symbol
LOC115415779
Gene description
triosephosphate isomerase
See related
Ensembl:ENSSORG00005016011
Gene type
protein coding
RefSeq status
MODEL
Organism
Sphaeramia orbicularis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Gobiaria; Kurtiformes; Apogonoidei; Apogonidae; Apogoninae; Sphaeramia
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Genomic context

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See LOC115415779 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
9
Annotation release Status Assembly Chr Location
100 current fSphaOr1.1 (GCF_902148855.1) Unplaced Scaffold NW_021941446.1 (9746..38088)

NW_021941446.1Genomic Context describing neighboring genes Neighboring gene gamma-enolase-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_021941446 Unplaced Scaffold Reference fSphaOr1.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables triose-phosphate isomerase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in gluconeogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in glyceraldehyde-3-phosphate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in glycerol catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in glycolytic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
triosephosphate isomerase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sphaeramia orbicularis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fSphaOr1.1

Genomic

  1. NW_021941446.1 Reference fSphaOr1.1

    Range
    9746..38088
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030129417.1 → XP_029985277.1  triosephosphate isomerase

    UniProtKB/TrEMBL
    A0A673AVY3, A0A673AX37
    Conserved Domains (1) summary
    PTZ00333
    Location:1 → 246
    PTZ00333; triosephosphate isomerase; Provisional

  2. XM_030129416.1 → XP_029985276.1  triosephosphate isomerase

    UniProtKB/TrEMBL
    A0A673AVY3, A0A673AX37
    Related
    ENSSORP00005033820.1, ENSSORT00005034733.1
    Conserved Domains (1) summary
    PTZ00333
    Location:1 → 246
    PTZ00333; triosephosphate isomerase; Provisional
Nucleotide Protein
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