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nfkbiz nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta [ Sphaeramia orbicularis (orbiculate cardinalfish) ]

Gene ID: 115431550, updated on 17-Mar-2024

Summary

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Gene symbol
nfkbiz
Gene description
nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta
See related
Ensembl:ENSSORG00005020951
Gene type
protein coding
RefSeq status
MODEL
Organism
Sphaeramia orbicularis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Gobiaria; Kurtiformes; Apogonoidei; Apogonidae; Apogoninae; Sphaeramia
Orthologs
human zebrafish all
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Genomic context

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See nfkbiz in Genome Data Viewer
Location:
chromosome: 2
Exon count:
11
Annotation release Status Assembly Chr Location
100 current fSphaOr1.1 (GCF_902148855.1) 2 NC_043958.1 (13187487..13193332, complement)

Chromosome 2 - NC_043958.1Genomic Context describing neighboring genes Neighboring gene jagunal homolog 1 Neighboring gene macrophage mannose receptor 1-like Neighboring gene uncharacterized LOC115431126 Neighboring gene glycerol kinase Neighboring gene transfer RNA glutamic acid (anticodon UUC)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_043958.1 Chromosome 2 Reference fSphaOr1.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of gene expression IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
NF-kappa-B inhibitor zeta-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sphaeramia orbicularis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fSphaOr1.1

Genomic

  1. NC_043958.1 Reference fSphaOr1.1

    Range
    13187487..13193332 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030151997.1 → XP_030007857.1  NF-kappa-B inhibitor zeta-like isoform X2

    UniProtKB/TrEMBL
    A0A673BS33
    Related
    ENSSORP00005045601.1, ENSSORT00005046756.1
    Conserved Domains (3) summary
    PHA02874
    Location:142 → 276
    PHA02874; ankyrin repeat protein; Provisional
    sd00045
    Location:149 → 183
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:298 → 390
    Ank_2; Ankyrin repeats (3 copies)

  2. XM_030151988.1 → XP_030007848.1  NF-kappa-B inhibitor zeta-like isoform X2

    UniProtKB/TrEMBL
    A0A673BS33
    Conserved Domains (3) summary
    PHA02874
    Location:142 → 276
    PHA02874; ankyrin repeat protein; Provisional
    sd00045
    Location:149 → 183
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:298 → 390
    Ank_2; Ankyrin repeats (3 copies)

  3. XM_030151979.1 → XP_030007839.1  NF-kappa-B inhibitor zeta-like isoform X1

    UniProtKB/TrEMBL
    A0A673BS33
    Conserved Domains (3) summary
    PHA02874
    Location:176 → 310
    PHA02874; ankyrin repeat protein; Provisional
    sd00045
    Location:183 → 217
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:332 → 424
    Ank_2; Ankyrin repeats (3 copies)
Nucleotide Protein
Heading Accession and Version

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