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sf1 splicing factor 1 [ Sphaeramia orbicularis (orbiculate cardinalfish) ]

Gene ID: 115438304, updated on 17-Mar-2024

Summary

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Gene symbol
sf1
Gene description
splicing factor 1
See related
Ensembl:ENSSORG00005012880
Gene type
protein coding
RefSeq status
MODEL
Organism
Sphaeramia orbicularis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Gobiaria; Kurtiformes; Apogonoidei; Apogonidae; Apogoninae; Sphaeramia
Orthologs
human zebrafish all
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Genomic context

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See sf1 in Genome Data Viewer
Location:
chromosome: 18
Exon count:
12
Annotation release Status Assembly Chr Location
100 current fSphaOr1.1 (GCF_902148855.1) 18 NC_043974.1 (16111151..16123494)

Chromosome 18 - NC_043974.1Genomic Context describing neighboring genes Neighboring gene RNA binding motif protein 4.1 Neighboring gene uncharacterized LOC115438940 Neighboring gene phosphorylase, glycogen, muscle b Neighboring gene protein c-ets-1-B-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_043974.1 Chromosome 18 Reference fSphaOr1.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
splicing factor 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sphaeramia orbicularis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fSphaOr1.1

Genomic

  1. NC_043974.1 Reference fSphaOr1.1

    Range
    16111151..16123494
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030161831.1 → XP_030017691.1  splicing factor 1 isoform X1

    UniProtKB/TrEMBL
    A0A673ADT8
    Related
    ENSSORP00005026908.1, ENSSORT00005027691.1
    Conserved Domains (2) summary
    smart00343
    Location:356 → 370
    ZnF_C2HC; zinc finger
    COG5176
    Location:113 → 334
    MSL5; Splicing factor (branch point binding protein) [RNA processing and modification]

  2. XM_030161832.1 → XP_030017692.1  splicing factor 1 isoform X2

    Conserved Domains (2) summary
    smart00343
    Location:356 → 370
    ZnF_C2HC; zinc finger
    COG5176
    Location:113 → 334
    MSL5; Splicing factor (branch point binding protein) [RNA processing and modification]
Nucleotide Protein
Heading Accession and Version

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