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pygmb phosphorylase, glycogen, muscle b [ Sphaeramia orbicularis (orbiculate cardinalfish) ]

Gene ID: 115438425, updated on 17-Mar-2024

Summary

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Gene symbol
pygmb
Gene description
phosphorylase, glycogen, muscle b
See related
Ensembl:ENSSORG00005012895
Gene type
protein coding
RefSeq status
MODEL
Organism
Sphaeramia orbicularis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Gobiaria; Kurtiformes; Apogonoidei; Apogonidae; Apogoninae; Sphaeramia
Also known as
pygm
Orthologs
zebrafish all
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Genomic context

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See pygmb in Genome Data Viewer
Location:
chromosome: 18
Exon count:
20
Annotation release Status Assembly Chr Location
100 current fSphaOr1.1 (GCF_902148855.1) 18 NC_043974.1 (16128627..16154056)

Chromosome 18 - NC_043974.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC115438940 Neighboring gene splicing factor 1 Neighboring gene protein c-ets-1-B-like Neighboring gene uncharacterized LOC115438185

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_043974.1 Chromosome 18 Reference fSphaOr1.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycogen phosphorylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables pyridoxal phosphate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glycogen catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
glycogen phosphorylase, muscle form
Names
glycogen phosphorylase, muscle associated

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sphaeramia orbicularis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fSphaOr1.1

Genomic

  1. NC_043974.1 Reference fSphaOr1.1

    Range
    16128627..16154056
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030162049.1 → XP_030017909.1  glycogen phosphorylase, muscle form

    UniProtKB/TrEMBL
    A0A673ADP3
    Related
    ENSSORP00005027380.1, ENSSORT00005028166.1
    Conserved Domains (1) summary
    cd04300
    Location:29 → 827
    GT35_Glycogen_Phosphorylase; glycogen phosphorylase and similar proteins
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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