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prtga protogenin homolog a (Gallus gallus) [ Sphaeramia orbicularis (orbiculate cardinalfish) ]

Gene ID: 115439536, updated on 17-Mar-2024

Summary

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Gene symbol
prtga
Gene description
protogenin homolog a (Gallus gallus)
See related
Ensembl:ENSSORG00005001706
Gene type
protein coding
RefSeq status
MODEL
Organism
Sphaeramia orbicularis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Gobiaria; Kurtiformes; Apogonoidei; Apogonidae; Apogoninae; Sphaeramia
Also known as
prtg
Orthologs
human zebrafish all
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Genomic context

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See prtga in Genome Data Viewer
Location:
chromosome: 3
Exon count:
19
Annotation release Status Assembly Chr Location
100 current fSphaOr1.1 (GCF_902148855.1) 3 NC_043959.1 (47067767..47097765, complement)

Chromosome 3 - NC_043959.1Genomic Context describing neighboring genes Neighboring gene RAB27A, member RAS oncogene family Neighboring gene phosphatidylinositol glycan anchor biosynthesis, class B Neighboring gene cell cycle progression 1 Neighboring gene NEDD4 E3 ubiquitin protein ligase a Neighboring gene regulatory factor X7

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_043959.1 Chromosome 3 Reference fSphaOr1.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in axon IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protogenin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sphaeramia orbicularis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fSphaOr1.1

Genomic

  1. NC_043959.1 Reference fSphaOr1.1

    Range
    47067767..47097765 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030163389.1 → XP_030019249.1  protogenin

    UniProtKB/TrEMBL
    A0A672Y830
    Related
    ENSSORP00005002778.1, ENSSORT00005002861.1
    Conserved Domains (4) summary
    cd00063
    Location:813 → 905
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam07679
    Location:128 → 214
    I-set; Immunoglobulin I-set domain
    pfam13927
    Location:226 → 298
    Ig_3; Immunoglobulin domain
    cl11960
    Location:31 → 122
    Ig; Immunoglobulin domain
Nucleotide Protein
Heading Accession and Version

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