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nfatc3a nuclear factor of activated T cells 3a [ Sphaeramia orbicularis (orbiculate cardinalfish) ]

Gene ID: 115439602, updated on 17-Mar-2024

Summary

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Gene symbol
nfatc3a
Gene description
nuclear factor of activated T cells 3a
See related
Ensembl:ENSSORG00005020423
Gene type
protein coding
RefSeq status
MODEL
Organism
Sphaeramia orbicularis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Gobiaria; Kurtiformes; Apogonoidei; Apogonidae; Apogoninae; Sphaeramia
Also known as
nfatc3
Orthologs
human zebrafish all
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Genomic context

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See nfatc3a in Genome Data Viewer
Location:
chromosome: 3
Exon count:
10
Annotation release Status Assembly Chr Location
100 current fSphaOr1.1 (GCF_902148855.1) 3 NC_043959.1 (40750604..40820858)

Chromosome 3 - NC_043959.1Genomic Context describing neighboring genes Neighboring gene talin 2a Neighboring gene DEAD (Asp-Glu-Ala-Asp) box polypeptide 28 Neighboring gene uncharacterized LOC115437421 Neighboring gene epithelial splicing regulatory protein 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_043959.1 Chromosome 3 Reference fSphaOr1.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription factor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in calcineurin-NFAT signaling cascade IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cytokine production IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of transcription regulator complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nuclear factor of activated T-cells, cytoplasmic 3
Names
nuclear factor of activated T cells 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sphaeramia orbicularis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fSphaOr1.1

Genomic

  1. NC_043959.1 Reference fSphaOr1.1

    Range
    40750604..40820858
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030163447.1 → XP_030019307.1  nuclear factor of activated T-cells, cytoplasmic 3

    UniProtKB/TrEMBL
    A0A673BNK9, A0A673BR86
    Related
    ENSSORP00005044300.1, ENSSORT00005045422.1
    Conserved Domains (3) summary
    cd07881
    Location:433 → 606
    RHD-n_NFAT; N-terminal sub-domain of the Rel homology domain (RHD) of nuclear factor of activated T-cells (NFAT) proteins
    PHA03247
    Location:725 → 1043
    PHA03247; large tegument protein UL36; Provisional
    cd01178
    Location:611 → 710
    IPT_NFAT; IPT domain of the NFAT family of transcription factors. NFAT transcription complexes are a target of calcineurin, a calcium dependent phosphatase, and activate genes mainly involved in cell-cell-interaction.
Nucleotide Protein
Heading Accession and Version

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