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myo5aa myosin VAa [ Sphaeramia orbicularis (orbiculate cardinalfish) ]

Gene ID: 115439605, updated on 17-Mar-2024

Summary

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Gene symbol
myo5aa
Gene description
myosin VAa
See related
Ensembl:ENSSORG00005020533
Gene type
protein coding
RefSeq status
MODEL
Organism
Sphaeramia orbicularis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Gobiaria; Kurtiformes; Apogonoidei; Apogonidae; Apogoninae; Sphaeramia
Also known as
myo5a
Orthologs
human zebrafish all
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Genomic context

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See myo5aa in Genome Data Viewer
Location:
chromosome: 3
Exon count:
42
Annotation release Status Assembly Chr Location
100 current fSphaOr1.1 (GCF_902148855.1) 3 NC_043959.1 (39691319..39753100)

Chromosome 3 - NC_043959.1Genomic Context describing neighboring genes Neighboring gene atos homolog A Neighboring gene cAMP-regulated phosphoprotein 19a Neighboring gene guanine nucleotide binding protein (G protein), beta 5b Neighboring gene BCL2 like 10

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_043959.1 Chromosome 3 Reference fSphaOr1.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables actin filament binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables microfilament motor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in actin filament organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vesicle transport along actin filament IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in actin cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of myosin complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: unconventional myosin-Va
Names
myosin VA

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sphaeramia orbicularis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fSphaOr1.1

Genomic

  1. NC_043959.1 Reference fSphaOr1.1

    Range
    39691319..39753100
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030163460.1 → XP_030019320.1  LOW QUALITY PROTEIN: unconventional myosin-Va

    UniProtKB/TrEMBL
    A0A673BPG9
    Related
    ENSSORP00005044666.1, ENSSORT00005045791.1
    Conserved Domains (4) summary
    smart00015
    Location:812 → 834
    IQ; Calmodulin-binding motif
    COG0419
    Location:901 → 1429
    SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
    cd01380
    Location:83 → 750
    MYSc_Myo5; class V myosin, motor domain
    cl03379
    Location:1473 → 1847
    Myo5-like_CBD; Cargo binding domain of myosin 5 and similar proteins
Nucleotide Protein
Heading Accession and Version

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