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trpm7 transient receptor potential cation channel, subfamily M, member 7 [ Sphaeramia orbicularis (orbiculate cardinalfish) ]

Gene ID: 115439651, updated on 17-Mar-2024

Summary

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Gene symbol
trpm7
Gene description
transient receptor potential cation channel, subfamily M, member 7
See related
Ensembl:ENSSORG00005001946
Gene type
protein coding
RefSeq status
MODEL
Organism
Sphaeramia orbicularis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Gobiaria; Kurtiformes; Apogonoidei; Apogonidae; Apogoninae; Sphaeramia
Orthologs
human zebrafish all
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Genomic context

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See trpm7 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
43
Annotation release Status Assembly Chr Location
100 current fSphaOr1.1 (GCF_902148855.1) 3 NC_043959.1 (39797764..39852319, complement)

Chromosome 3 - NC_043959.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC115415978 Neighboring gene BCL2 like 10 Neighboring gene uncharacterized LOC115415379 Neighboring gene gonadotropin-releasing hormone II receptor-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_043959.1 Chromosome 3 Reference fSphaOr1.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein serine/threonine kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in calcium ion transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in monoatomic cation homeostasis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in monoatomic cation transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein phosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein tetramerization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transient receptor potential cation channel subfamily M member 7

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sphaeramia orbicularis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fSphaOr1.1

Genomic

  1. NC_043959.1 Reference fSphaOr1.1

    Range
    39797764..39852319 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030163529.1 → XP_030019389.1  transient receptor potential cation channel subfamily M member 7 isoform X2

    UniProtKB/TrEMBL
    A0A673AXP1, A0A673AZ65
    Related
    ENSSORP00005034414.1, ENSSORT00005035333.1
    Conserved Domains (4) summary
    TIGR00870
    Location:661 → 1194
    trp; transient-receptor-potential calcium channel protein
    cd16971
    Location:1622 → 1860
    Alpha_kinase_ChaK1_TRMP7; Alpha-kinase domain of channel kinase 1, also called transient receptor potential cation channel subfamily M member 7
    pfam16519
    Location:1185 → 1240
    TRPM_tetra; Tetramerisation domain of TRPM
    pfam18139
    Location:107 → 372
    LSDAT_euk; SLOG in TRPM

  2. XM_030163520.1 → XP_030019380.1  transient receptor potential cation channel subfamily M member 7 isoform X1

    UniProtKB/TrEMBL
    A0A673AXP1
    Related
    ENSSORP00005034875.1, ENSSORT00005035799.1
    Conserved Domains (4) summary
    TIGR00870
    Location:677 → 1210
    trp; transient-receptor-potential calcium channel protein
    cd16971
    Location:1638 → 1876
    Alpha_kinase_ChaK1_TRMP7; Alpha-kinase domain of channel kinase 1, also called transient receptor potential cation channel subfamily M member 7
    pfam16519
    Location:1201 → 1256
    TRPM_tetra; Tetramerisation domain of TRPM
    pfam18139
    Location:123 → 388
    LSDAT_euk; SLOG in TRPM

  3. XM_030163538.1 → XP_030019398.1  transient receptor potential cation channel subfamily M member 7 isoform X3

    Conserved Domains (3) summary
    TIGR00870
    Location:677 → 1023
    trp; transient-receptor-potential calcium channel protein
    pfam00520
    Location:877 → 1063
    Ion_trans; Ion transport protein
    pfam18139
    Location:123 → 388
    LSDAT_euk; SLOG in TRPM

  4. XM_030163553.1 → XP_030019413.1  transient receptor potential cation channel subfamily M member 7 isoform X5

    Conserved Domains (1) summary
    pfam18139
    Location:123 → 388
    LSDAT_euk; SLOG in TRPM

  5. XM_030163544.1 → XP_030019404.1  transient receptor potential cation channel subfamily M member 7 isoform X4

    Conserved Domains (1) summary
    pfam18139
    Location:123 → 388
    LSDAT_euk; SLOG in TRPM

  6. XM_030163561.1 → XP_030019421.1  transient receptor potential cation channel subfamily M member 7 isoform X6

    Conserved Domains (1) summary
    pfam18139
    Location:123 → 388
    LSDAT_euk; SLOG in TRPM
Nucleotide Protein
Heading Accession and Version

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