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pkp3b plakophilin 3b [ Sphaeramia orbicularis (orbiculate cardinalfish) ]

Gene ID: 115439692, updated on 17-Mar-2024

Summary

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Gene symbol
pkp3b
Gene description
plakophilin 3b
See related
Ensembl:ENSSORG00005000822
Gene type
protein coding
RefSeq status
MODEL
Organism
Sphaeramia orbicularis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Gobiaria; Kurtiformes; Apogonoidei; Apogonidae; Apogoninae; Sphaeramia
Orthologs
zebrafish all
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Genomic context

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See pkp3b in Genome Data Viewer
Location:
chromosome: 3
Exon count:
13
Annotation release Status Assembly Chr Location
100 current fSphaOr1.1 (GCF_902148855.1) 3 NC_043959.1 (28871148..28936140, complement)

Chromosome 3 - NC_043959.1Genomic Context describing neighboring genes Neighboring gene anoctamin 9b Neighboring gene uncharacterized LOC115410051 Neighboring gene CD81 molecule a Neighboring gene uncharacterized LOC115410046 Neighboring gene tryptophan 5-hydroxylase 1-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_043959.1 Chromosome 3 Reference fSphaOr1.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cadherin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell-cell junction assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in adherens junction IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
plakophilin-3-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sphaeramia orbicularis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fSphaOr1.1

Genomic

  1. NC_043959.1 Reference fSphaOr1.1

    Range
    28871148..28936140 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030163629.1 → XP_030019489.1  plakophilin-3-like

    UniProtKB/TrEMBL
    A0A672YCK7, A0A672YE29
    Related
    ENSSORP00005001385.1, ENSSORT00005001427.1
    Conserved Domains (4) summary
    smart00185
    Location:337 → 377
    ARM; Armadillo/beta-catenin-like repeats
    sd00043
    Location:308 → 333
    ARM; armadillo repeat [structural motif]
    pfam00514
    Location:379 → 418
    Arm; Armadillo/beta-catenin-like repeat
    cl18945
    Location:58 → 163
    AAT_I; Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the ...
Nucleotide Protein
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