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ano9b anoctamin 9b [ Sphaeramia orbicularis (orbiculate cardinalfish) ]

Gene ID: 115439694, updated on 12-Sep-2024

Summary

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Gene symbol
ano9b
Gene description
anoctamin 9b
See related
Ensembl:ENSSORG00005000809
Gene type
protein coding
RefSeq status
MODEL
Organism
Sphaeramia orbicularis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Gobiaria; Kurtiformes; Apogonoidei; Apogonidae; Apogoninae; Sphaeramia
Orthologs
human zebrafish all
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Genomic context

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See ano9b in Genome Data Viewer
Location:
chromosome: 3
Exon count:
24
Annotation release Status Assembly Chr Location
100 current fSphaOr1.1 (GCF_902148855.1) 3 NC_043959.1 (28791872..28826749)

Chromosome 3 - NC_043959.1Genomic Context describing neighboring genes Neighboring gene SHC SH2-domain binding protein 1 Neighboring gene tumor suppressing subtransferable candidate 4 Neighboring gene uncharacterized LOC115410051 Neighboring gene plakophilin 3b

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_043959.1 Chromosome 3 Reference fSphaOr1.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables chloride channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chloride transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
anoctamin-9-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sphaeramia orbicularis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fSphaOr1.1

Genomic

  1. NC_043959.1 Reference fSphaOr1.1

    Range
    28791872..28826749
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030163643.1 → XP_030019503.1  anoctamin-9-like

    UniProtKB/TrEMBL
    A0A672YAL9, A0A672YCK4
    Related
    ENSSORP00005001374.1, ENSSORT00005001414.1
    Conserved Domains (2) summary
    pfam04547
    Location:179 → 750
    Anoctamin; Calcium-activated chloride channel
    pfam16178
    Location:113 → 175
    Anoct_dimer; dimerization domain of Ca+-activated chloride-channel, anoctamin

RNA

  1. XR_003938290.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases