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LOC115439695 E3 ubiquitin-protein ligase TRIM39-like [ Sphaeramia orbicularis (orbiculate cardinalfish) ]

Gene ID: 115439695, updated on 23-Oct-2023

Summary

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Gene symbol
LOC115439695
Gene description
E3 ubiquitin-protein ligase TRIM39-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Sphaeramia orbicularis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Gobiaria; Kurtiformes; Apogonoidei; Apogonidae; Apogoninae; Sphaeramia
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Genomic context

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See LOC115439695 in Genome Data Viewer
Location:
chromosome: 19
Exon count:
1
Annotation release Status Assembly Chr Location
100 current fSphaOr1.1 (GCF_902148855.1) 19 NC_043975.1 (43141176..43143176, complement)

Chromosome 19 - NC_043975.1Genomic Context describing neighboring genes Neighboring gene receptor accessory protein 3b Neighboring gene jumonji domain containing 1Cb Neighboring gene neurotrypsin-like Neighboring gene calcium/calmodulin-dependent protein kinase type II subunit gamma Neighboring gene uncharacterized LOC115439700 Neighboring gene BMS1 ribosome biogenesis factor

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_043975.1 Chromosome 19 Reference fSphaOr1.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
E3 ubiquitin-protein ligase TRIM39-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sphaeramia orbicularis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fSphaOr1.1

Genomic

  1. NC_043975.1 Reference fSphaOr1.1

    Range
    43141176..43143176 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030163640.1 → XP_030019500.1  E3 ubiquitin-protein ligase TRIM39-like

    Conserved Domains (5) summary
    cd13733
    Location:389 → 560
    SPRY_PRY_C-I_1; PRY/SPRY domain in tripartite motif-containing (TRIM) proteins, including TRIM5, TRIM6, TRIM7, TRIM10, TRIM11, TRIM17, TRIM20, TRIM21, TRIM27, TRIM35, TRIM38, TRIM41, TRIM50, TRIM58, TRIM60, TRIM62, TRIM69, TRIM72, NF7 and bloodthirsty
    cd00162
    Location:15 → 55
    RING_Ubox; RING-HC finger (C3HC4-type) [structural motif]
    pfam01442
    Location:215 → 305
    Apolipoprotein; Apolipoprotein A1/A4/E domain
    cl00034
    Location:108 → 155
    Bbox_SF; B-box-type zinc finger superfamily
    cl17238
    Location:15 → 56
    RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain
Nucleotide Protein
Heading Accession and Version

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