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egr2b early growth response 2b [ Sphaeramia orbicularis (orbiculate cardinalfish) ]

Gene ID: 115439696, updated on 17-Mar-2024

Summary

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Gene symbol
egr2b
Gene description
early growth response 2b
See related
Ensembl:ENSSORG00005020143
Gene type
protein coding
RefSeq status
MODEL
Organism
Sphaeramia orbicularis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Gobiaria; Kurtiformes; Apogonoidei; Apogonidae; Apogoninae; Sphaeramia
Orthologs
human zebrafish all
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Genomic context

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See egr2b in Genome Data Viewer
Location:
chromosome: 19
Exon count:
2
Annotation release Status Assembly Chr Location
100 current fSphaOr1.1 (GCF_902148855.1) 19 NC_043975.1 (43473425..43475623, complement)

Chromosome 19 - NC_043975.1Genomic Context describing neighboring genes Neighboring gene BMS1 ribosome biogenesis factor Neighboring gene uncharacterized LOC115439699 Neighboring gene 2-aminoethanethiol (cysteamine) dioxygenase a Neighboring gene early growth response protein 2b-like Neighboring gene cerebellar degeneration-related protein 2-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_043975.1 Chromosome 19 Reference fSphaOr1.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
early growth response protein 2b-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sphaeramia orbicularis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fSphaOr1.1

Genomic

  1. NC_043975.1 Reference fSphaOr1.1

    Range
    43473425..43475623 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030163641.1 → XP_030019501.1  early growth response protein 2b-like

    UniProtKB/TrEMBL
    A0A673BR13
    Related
    ENSSORP00005043639.1, ENSSORT00005044740.1
    Conserved Domains (4) summary
    COG5048
    Location:357 → 413
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:331 → 353
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:329 → 353
    zf-C2H2; Zinc finger, C2H2 type
    pfam11928
    Location:95 → 179
    DUF3446; Domain of unknown function (DUF3446)
Nucleotide Protein
Heading Accession and Version

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