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LOC115439707 tryptophan 5-hydroxylase 1-like [ Sphaeramia orbicularis (orbiculate cardinalfish) ]

Gene ID: 115439707, updated on 23-Oct-2023

Summary

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Gene symbol
LOC115439707
Gene description
tryptophan 5-hydroxylase 1-like
See related
Ensembl:ENSSORG00005000840
Gene type
protein coding
RefSeq status
MODEL
Organism
Sphaeramia orbicularis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Gobiaria; Kurtiformes; Apogonoidei; Apogonidae; Apogoninae; Sphaeramia
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Genomic context

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See LOC115439707 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
12
Annotation release Status Assembly Chr Location
100 current fSphaOr1.1 (GCF_902148855.1) 3 NC_043959.1 (28987532..29000312, complement)

Chromosome 3 - NC_043959.1Genomic Context describing neighboring genes Neighboring gene plakophilin 3b Neighboring gene CD81 molecule a Neighboring gene uncharacterized LOC115410046 Neighboring gene AP-2 complex subunit alpha-2 Neighboring gene chromosome 3 C19orf12 homolog

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_043959.1 Chromosome 3 Reference fSphaOr1.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables iron ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables tryptophan 5-monooxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in aromatic amino acid metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in serotonin biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in neuron projection IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tryptophan 5-hydroxylase 1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sphaeramia orbicularis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fSphaOr1.1

Genomic

  1. NC_043959.1 Reference fSphaOr1.1

    Range
    28987532..29000312 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030163672.1 → XP_030019532.1  tryptophan 5-hydroxylase 1-like isoform X3

    UniProtKB/TrEMBL
    A0A672YBL3
    Conserved Domains (2) summary
    pfam00351
    Location:96 → 426
    Biopterin_H; Biopterin-dependent aromatic amino acid hydroxylase
    cl09141
    Location:29 → 81
    ACT; ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme

  2. XM_030163652.1 → XP_030019512.1  tryptophan 5-hydroxylase 1-like isoform X1

    UniProtKB/TrEMBL
    A0A672YBL3
    Related
    ENSSORP00005002124.1, ENSSORT00005002181.1
    Conserved Domains (1) summary
    TIGR01270
    Location:44 → 479
    Trp_5_monoox; tryptophan 5-monooxygenase, tetrameric

  3. XM_030163661.1 → XP_030019521.1  tryptophan 5-hydroxylase 1-like isoform X2

    UniProtKB/TrEMBL
    A0A672YBL3
    Conserved Domains (1) summary
    TIGR01270
    Location:44 → 428
    Trp_5_monoox; tryptophan 5-monooxygenase, tetrameric
Nucleotide Protein
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