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ccz1 CCZ1 homolog, vacuolar protein trafficking and biogenesis associated [ Sphaeramia orbicularis (orbiculate cardinalfish) ]

Gene ID: 115439713, updated on 17-Mar-2024

Summary

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Gene symbol
ccz1
Gene description
CCZ1 homolog, vacuolar protein trafficking and biogenesis associated
See related
Ensembl:ENSSORG00005014080
Gene type
protein coding
RefSeq status
MODEL
Organism
Sphaeramia orbicularis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Gobiaria; Kurtiformes; Apogonoidei; Apogonidae; Apogoninae; Sphaeramia
Orthologs
human zebrafish all
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Genomic context

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See ccz1 in Genome Data Viewer
Location:
chromosome: 19
Exon count:
18
Annotation release Status Assembly Chr Location
100 current fSphaOr1.1 (GCF_902148855.1) 19 NC_043975.1 (37026384..37043884, complement)

Chromosome 19 - NC_043975.1Genomic Context describing neighboring genes Neighboring gene radial spoke head 10 homolog B Neighboring gene discs, large (Drosophila) homolog-associated protein 5 Neighboring gene parvalbumin 9 Neighboring gene parvalbumin 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_043975.1 Chromosome 19 Reference fSphaOr1.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Mon1-Ccz1 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in intracellular membrane-bounded organelle IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
vacuolar fusion protein CCZ1 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sphaeramia orbicularis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fSphaOr1.1

Genomic

  1. NC_043975.1 Reference fSphaOr1.1

    Range
    37026384..37043884 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030163655.1 → XP_030019515.1  vacuolar fusion protein CCZ1 homolog

    UniProtKB/TrEMBL
    A0A673AIH1, A0A673AM80
    Related
    ENSSORP00005029520.1, ENSSORT00005030353.1
    Conserved Domains (1) summary
    pfam08217
    Location:24 → 477
    DUF1712; Fungal domain of unknown function (DUF1712)

  2. XM_030163656.1 → XP_030019516.1  vacuolar fusion protein CCZ1 homolog

    UniProtKB/TrEMBL
    A0A673AIH1, A0A673AM80
    Related
    ENSSORP00005029527.1, ENSSORT00005030360.1
    Conserved Domains (1) summary
    pfam08217
    Location:24 → 477
    DUF1712; Fungal domain of unknown function (DUF1712)
Nucleotide Protein
Heading Accession and Version

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