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pvalb9 parvalbumin 9 [ Sphaeramia orbicularis (orbiculate cardinalfish) ]

Gene ID: 115439714, updated on 17-Mar-2024

Summary

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Gene symbol
pvalb9
Gene description
parvalbumin 9
See related
Ensembl:ENSSORG00005014101
Gene type
protein coding
RefSeq status
MODEL
Organism
Sphaeramia orbicularis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Gobiaria; Kurtiformes; Apogonoidei; Apogonidae; Apogoninae; Sphaeramia
Orthologs
zebrafish all
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Genomic context

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See pvalb9 in Genome Data Viewer
Location:
chromosome: 19
Exon count:
5
Annotation release Status Assembly Chr Location
100 current fSphaOr1.1 (GCF_902148855.1) 19 NC_043975.1 (37044459..37047494, complement)

Chromosome 19 - NC_043975.1Genomic Context describing neighboring genes Neighboring gene discs, large (Drosophila) homolog-associated protein 5 Neighboring gene CCZ1 homolog, vacuolar protein trafficking and biogenesis associated Neighboring gene parvalbumin 3 Neighboring gene parvalbumin, thymic-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_043975.1 Chromosome 19 Reference fSphaOr1.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
putative oncomodulin-2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sphaeramia orbicularis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fSphaOr1.1

Genomic

  1. NC_043975.1 Reference fSphaOr1.1

    Range
    37044459..37047494 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030163657.1 → XP_030019517.1  putative oncomodulin-2

    UniProtKB/TrEMBL
    A0A673AII1
    Related
    ENSSORP00005029530.1, ENSSORT00005030363.1
    Conserved Domains (1) summary
    cd16255
    Location:9 → 109
    EFh_parvalbumin_beta; EF-hand, calcium binding motif, found in beta-parvalbumin
Nucleotide Protein
Heading Accession and Version

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