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LOC115442845 uncharacterized LOC115442845 [ Manduca sexta (tobacco hornworm) ]

Gene ID: 115442845, updated on 14-Dec-2023

Summary

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Gene symbol
LOC115442845
Gene description
uncharacterized LOC115442845
Locus tag
O3G_MSEX005856
See related
EnsemblRapid:ENSMSXG00000020570
Gene type
protein coding
RefSeq status
MODEL
Organism
Manduca sexta
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Bombycoidea; Sphingidae; Sphinginae; Sphingini; Manduca
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Genomic context

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See LOC115442845 in Genome Data Viewer
Location:
chromosome: 18
Exon count:
11
Annotation release Status Assembly Chr Location
102 current JHU_Msex_v1.0 (GCF_014839805.1) 18 NC_051132.1 (4358161..4362711)
100 previous assembly Msex_1.0 (GCF_000262585.1) Unplaced Scaffold NW_021942066.1 (464372..468784)

Chromosome 18 - NC_051132.1Genomic Context describing neighboring genes Neighboring gene protein BCCIP homolog Neighboring gene protein polybromo-1 Neighboring gene uncharacterized LOC115442849 Neighboring gene uncharacterized LOC115442847 Neighboring gene transcription factor LBX1-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Integrated modeling of protein-coding genes in the Manduca sexta genome using RNA-Seq data from the biochemical model insect. Cao X, et al. Insect Biochem Mol Biol, 2015 Jul. PMID 25612938, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein LOC115442845

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Manduca sexta Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference JHU_Msex_v1.0 Primary Assembly

Genomic

  1. NC_051132.1 Reference JHU_Msex_v1.0 Primary Assembly

    Range
    4358161..4362711
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030168035.2 → XP_030023895.1  uncharacterized protein LOC115442845 isoform X3

    UniProtKB/TrEMBL
    A0A921Z075, A0A921Z0G6
    Related
    ENSMSXP00000029573.1, ENSMSXT00000033956.1

  2. XM_030168031.2 → XP_030023891.1  uncharacterized protein LOC115442845 isoform X3

    UniProtKB/TrEMBL
    A0A921Z075, A0A921Z0G6
    Related
    ENSMSXP00000029570.1, ENSMSXT00000033953.1

  3. XM_030168037.2 → XP_030023897.2  uncharacterized protein LOC115442845 isoform X1

    UniProtKB/TrEMBL
    A0A921Z0G6
    Related
    ENSMSXP00000029554.1, ENSMSXT00000033933.1

  4. XM_030168036.2 → XP_030023896.1  uncharacterized protein LOC115442845 isoform X3

    UniProtKB/TrEMBL
    A0A921Z075, A0A921Z0G6

  5. XM_030168034.2 → XP_030023894.1  uncharacterized protein LOC115442845 isoform X3

    UniProtKB/TrEMBL
    A0A921Z075, A0A921Z0G6

  6. XM_030168030.2 → XP_030023890.1  uncharacterized protein LOC115442845 isoform X2

    UniProtKB/TrEMBL
    A0A921Z0G6

  7. XM_030168032.2 → XP_030023892.1  uncharacterized protein LOC115442845 isoform X3

    UniProtKB/TrEMBL
    A0A921Z075, A0A921Z0G6

  8. XM_030168033.2 → XP_030023893.1  uncharacterized protein LOC115442845 isoform X3

    UniProtKB/TrEMBL
    A0A921Z075, A0A921Z0G6
    Related
    ENSMSXP00000029557.1, ENSMSXT00000033937.1

  9. XM_030168038.2 → XP_030023898.1  uncharacterized protein LOC115442845 isoform X4

    UniProtKB/TrEMBL
    A0A921Z043
Nucleotide Protein
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