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ctsd cathepsin D [ Gadus morhua (Atlantic cod) ]

Gene ID: 115558196, updated on 12-Sep-2024

Summary

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Gene symbol
ctsd
Gene description
cathepsin D
See related
Ensembl:ENSGMOG00000007819
Gene type
protein coding
RefSeq status
MODEL
Organism
Gadus morhua
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Zeiogadaria; Gadariae; Gadiformes; Gadoidei; Gadidae; Gadus
Orthologs
zebrafish all
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Genomic context

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See ctsd in Genome Data Viewer
Location:
chromosome: 14
Exon count:
9
Annotation release Status Assembly Chr Location
100 current gadMor3.0 (GCF_902167405.1) 14 NC_044061.1 (21077914..21083996, complement)

Chromosome 14 - NC_044061.1Genomic Context describing neighboring genes Neighboring gene dopamine receptor D4b Neighboring gene cadherin-related family member 5a Neighboring gene uncharacterized LOC115558199 Neighboring gene alpha-2Db adrenergic receptor-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_044061.1 Chromosome 14 Reference gadMor3.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Cathepsin D from Atlantic cod (Gadus morhua L.) liver. Isolation and comparative studies. Wang PA, et al. Comp Biochem Physiol B Biochem Mol Biol, 2007 Jul. PMID 17428719
  2. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables aspartic-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in lysosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cathepsin D

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gadus morhua Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference gadMor3.0 Primary Assembly

Genomic

  1. NC_044061.1 Reference gadMor3.0 Primary Assembly

    Range
    21077914..21083996 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030376083.1 → XP_030231943.1  cathepsin D

    UniProtKB/TrEMBL
    A0A8C4Z7B9, A0A8C5B1L2
    Related
    ENSGMOP00000037715.1, ENSGMOT00000037001.1
    Conserved Domains (2) summary
    cd05490
    Location:70 → 394
    Cathepsin_D2; pepsin family of proteinases
    pfam07966
    Location:19 → 38
    A1_Propeptide; A1 Propeptide
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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