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capn1 calpain 1 [ Sparus aurata (gilthead seabream) ]

Gene ID: 115589619, updated on 17-Mar-2024

Summary

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Gene symbol
capn1
Gene description
calpain 1
See related
Ensembl:ENSSAUG00010007897
Gene type
protein coding
RefSeq status
MODEL
Organism
Sparus aurata
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Spariformes; Sparidae; Sparus
Orthologs
zebrafish all
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Genomic context

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See capn1 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
22
Annotation release Status Assembly Chr Location
100 current fSpaAur1.1 (GCF_900880675.1) 10 NC_044196.1 (17009259..17038175, complement)

Chromosome 10 - NC_044196.1Genomic Context describing neighboring genes Neighboring gene potassium inwardly rectifying channel subfamily J member 10a Neighboring gene purine nucleoside phosphorylase 5a Neighboring gene splicing factor 3b, subunit 2 Neighboring gene phosphofurin acidic cluster sorting protein 1 Neighboring gene uncharacterized LOC115589649

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_044196.1 Chromosome 10 Reference fSpaAur1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Characterisation and expression of calpain family members in relation to nutritional status, diet composition and flesh texture in gilthead sea bream (Sparus aurata). Salmerón C, et al. PLoS One, 2013. PMID 24086513, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium-dependent cysteine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
calpain-1 catalytic subunit-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sparus aurata Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fSpaAur1.1 Primary Assembly

Genomic

  1. NC_044196.1 Reference fSpaAur1.1 Primary Assembly

    Range
    17009259..17038175 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030430630.1 → XP_030286490.1  calpain-1 catalytic subunit-like

    UniProtKB/TrEMBL
    A0A671V5F1, U5YRM2
    Related
    ENSSAUP00010020115.1, ENSSAUT00010021268.1
    Conserved Domains (4) summary
    cd00214
    Location:360 → 515
    Calpain_III; Calpain, subdomain III. Calpains are calcium-activated cytoplasmic cysteine proteinases, participate in cytoskeletal remodeling processes, cell differentiation, apoptosis and signal transduction. Catalytic domain and the two calmodulin-like domains are ...
    cd15897
    Location:537 → 565
    EFh_PEF; EF-hand motif [structural motif]
    cl25352
    Location:537 → 705
    EFh_PEF; The penta-EF hand (PEF) family
    pfam00648
    Location:52 → 348
    Peptidase_C2; Calpain family cysteine protease
Nucleotide Protein
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Gene LinkOut

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