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il1b interleukin 1, beta [ Sparus aurata (gilthead seabream) ]

Gene ID: 115592467, updated on 12-Sep-2024

Summary

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Gene symbol
il1b
Gene description
interleukin 1, beta
See related
Ensembl:ENSSAUG00010001602
Gene type
protein coding
RefSeq status
MODEL
Organism
Sparus aurata
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Spariformes; Sparidae; Sparus
Also known as
il1fm2
Orthologs
zebrafish all
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Genomic context

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See il1b in Genome Data Viewer
Location:
chromosome: 12
Exon count:
6
Annotation release Status Assembly Chr Location
100 current fSpaAur1.1 (GCF_900880675.1) 12 NC_044198.1 (25915718..25919492, complement)

Chromosome 12 - NC_044198.1Genomic Context describing neighboring genes Neighboring gene transcriptional activator protein Pur-beta-like Neighboring gene uncharacterized LOC115593347 Neighboring gene uncharacterized LOC115592468 Neighboring gene cyclin and CBS domain divalent metal cation transport mediator 3 Neighboring gene metal transporter CNNM4-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_044198.1 Chromosome 12 Reference fSpaAur1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cytokine activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cellular response to lipopolysaccharide IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cytokine-mediated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in inflammatory response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in macrophage chemotaxis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in neutrophil activation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of gene expression IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of non-canonical NF-kappaB signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
interleukin-1 beta-like
Names
interleukin-1 family member 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sparus aurata Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fSpaAur1.1 Primary Assembly

Genomic

  1. NC_044198.1 Reference fSpaAur1.1 Primary Assembly

    Range
    25915718..25919492 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030435228.1 → XP_030291088.1  interleukin-1 beta-like

    UniProtKB/TrEMBL
    A0A671TNT9, W0USQ2
    Related
    ENSSAUP00010003101.1, ENSSAUT00010003337.1
    Conserved Domains (1) summary
    cl00094
    Location:125 → 267
    IL1; Interleukin-1 homologes; Cytokines with various biological functions. Interleukin 1 alpha and beta are also known as hematopoietin and catabolin. This family also contains interleukin-1 receptor antagonists (inhibitors).
Nucleotide Protein
Heading Accession and Version

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