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sod1 superoxide dismutase 1, soluble [ Sparus aurata (gilthead seabream) ]

Gene ID: 115594763, updated on 17-Mar-2024

Summary

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Gene symbol
sod1
Gene description
superoxide dismutase 1, soluble
See related
Ensembl:ENSSAUG00010014144
Gene type
protein coding
RefSeq status
MODEL
Organism
Sparus aurata
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Spariformes; Sparidae; Sparus
Also known as
Cu-Zn-SOD
Orthologs
human zebrafish all
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Genomic context

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See sod1 in Genome Data Viewer
Location:
chromosome: 13
Exon count:
5
Annotation release Status Assembly Chr Location
100 current fSpaAur1.1 (GCF_900880675.1) 13 NC_044199.1 (12820068..12824830, complement)

Chromosome 13 - NC_044199.1Genomic Context describing neighboring genes Neighboring gene glutamate receptor, ionotropic, kainate 1a Neighboring gene T-lymphoma invasion and metastasis-inducing protein 1-like Neighboring gene SR-related CTD-associated factor 4a Neighboring gene hormonally up-regulated Neu-associated kinase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_044199.1 Chromosome 13 Reference fSpaAur1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Dietary oils mediate cortisol kinetics and the hepatic mRNA expression profile of stress-responsive genes in gilthead sea bream (Sparus aurata) exposed to crowding stress. Implications on energy homeostasis and stress susceptibility. Pérez-Sánchez J, et al. Comp Biochem Physiol Part D Genomics Proteomics, 2013 Jun. PMID 23466468
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables copper ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables superoxide dismutase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in removal of superoxide radicals IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in peroxisome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
superoxide dismutase [Cu-Zn]
Names
Cu/Zn SOD
Cu/Zn superoxide dismutase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sparus aurata Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fSpaAur1.1 Primary Assembly

Genomic

  1. NC_044199.1 Reference fSpaAur1.1 Primary Assembly

    Range
    12820068..12824830 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030439011.1 → XP_030294871.1  superoxide dismutase [Cu-Zn]

    UniProtKB/TrEMBL
    M9NZV8
    Related
    ENSSAUP00010033309.1, ENSSAUT00010035095.1
    Conserved Domains (1) summary
    pfam00080
    Location:13 → 150
    Sod_Cu; Copper/zinc superoxide dismutase (SODC)
Nucleotide Protein
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