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LINC01297-DUXAP10-NBEAP6 LINC01297-DUXAP10-NBEAP6 readthrough [ Homo sapiens (human) ]

Gene ID: 115801414, updated on 10-Oct-2023

Summary

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Gene symbol
LINC01297-DUXAP10-NBEAP6
Gene description
LINC01297-DUXAP10-NBEAP6 readthrough
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This locus represents naturally occurring readthrough transcription between the neighboring LINC01297 (long intergenic non-protein coding RNA 1297), DUXAP10 (double homeobox A pseudogene 10) and NBEAP6 (neurobeachin pseudogene 6) genes on chromosome 14. The readthrough transcripts at this locus contain multiple, short ORFs and are unlikely to produce a protein product. [provided by RefSeq, Sep 2019]
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Genomic context

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See LINC01297-DUXAP10-NBEAP6 in Genome Data Viewer
Location:
14q11.2
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 14 NC_000014.9 (19268803..19384288, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 14 NC_060938.1 (13581937..13697394, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 14 NC_000014.8 (19603418..19718903)

Chromosome 14 - NC_000014.9Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100420097 Neighboring gene neurobeachin pseudogene 6 Neighboring gene TOMM40 pseudogene 1 Neighboring gene double homeobox A pseudogene 10 Neighboring gene BMS1 pseudogene 17 Neighboring gene MPRA-validated peak2108 silencer Neighboring gene long intergenic non-protein coding RNA 1297 Neighboring gene GRAM domain containing 4 pseudogene 3 Neighboring gene uncharacterized LOC101929572 Neighboring gene POTE ankyrin domain family member G Neighboring gene RNA, U6 small nuclear 1268, pseudogene Neighboring gene uncharacterized LOC124903277

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

General gene information

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NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_164308.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL512624, AL589743, AL929602

  2. NR_164309.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL512624, AL589743, AL929602

  3. NR_164310.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL512624, AL589743, AL929602

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000014.9 Reference GRCh38.p14 Primary Assembly

    Range
    19268803..19384288 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060938.1 Alternate T2T-CHM13v2.0

    Range
    13581937..13697394 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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