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LOC115995487 histone-lysine N-methyltransferase CLF [ Quercus lobata ]

Gene ID: 115995487, updated on 14-Dec-2023

Summary

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Gene symbol
LOC115995487
Gene description
histone-lysine N-methyltransferase CLF
Gene type
protein coding
RefSeq status
MODEL
Organism
Quercus lobata
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
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Genomic context

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Location:
chromosome: 6
Exon count:
17
Annotation release Status Assembly Chr Location
100 current ValleyOak3.0 (GCF_001633185.1) 6 NC_044909.1 (40847733..40860283)

Chromosome 6 - NC_044909.1Genomic Context describing neighboring genes Neighboring gene uncharacterized acetyltransferase At3g50280-like Neighboring gene tRNA-specific 2-thiouridylase MnmA-like Neighboring gene PI-PLC X domain-containing protein At5g67130 Neighboring gene F-box protein At5g67140

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_044909.1 Chromosome 6 Reference ValleyOak3.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables histone methyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chromatin remodeling IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of PcG protein complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
histone-lysine N-methyltransferase CLF

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Quercus lobata Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ValleyOak3.0

Genomic

  1. NC_044909.1 Reference ValleyOak3.0

    Range
    40847733..40860283
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031120072.1 → XP_030975932.1  histone-lysine N-methyltransferase CLF isoform X1

    UniProtKB/TrEMBL
    A0A7N2M024
    Conserved Domains (2) summary
    pfam18264
    Location:718 → 749
    preSET_CXC; CXC domain
    cd10519
    Location:780 → 896
    SET_EZH; SET domain found in enhancer of zeste homolog 1 (EZH1), zeste homolog 2 (EZH2) and similar proteins

  2. XM_031120073.1 → XP_030975933.1  histone-lysine N-methyltransferase CLF isoform X2

    UniProtKB/TrEMBL
    A0A7N2M024
    Conserved Domains (2) summary
    pfam18264
    Location:711 → 742
    preSET_CXC; CXC domain
    cd10519
    Location:773 → 889
    SET_EZH; SET domain found in enhancer of zeste homolog 1 (EZH1), zeste homolog 2 (EZH2) and similar proteins
Nucleotide Protein
Heading Accession and Version

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