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LOC116033992 transcription factor MYC1 [ Ipomoea triloba (trilobed morning glory) ]

Gene ID: 116033992, updated on 14-Dec-2023

Summary

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Gene symbol
LOC116033992
Gene description
transcription factor MYC1
Gene type
protein coding
RefSeq status
MODEL
Organism
Ipomoea triloba
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Genomic context

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See LOC116033992 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
1
Annotation release Status Assembly Chr Location
100 current ASM357664v1 (GCF_003576645.1) 11 NC_044926.1 (25296441..25298226)

Chromosome 11 - NC_044926.1Genomic Context describing neighboring genes Neighboring gene beta-glucosidase 1-like Neighboring gene rho GTPase-activating protein 5-like Neighboring gene uncharacterized LOC115996161 Neighboring gene probable protein S-acyltransferase 12

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_044926.1 Chromosome 11 Reference ASM357664v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription cis-regulatory region binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor MYC1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ipomoea triloba Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM357664v1 Primary Assembly

Genomic

  1. NC_044926.1 Reference ASM357664v1 Primary Assembly

    Range
    25296441..25298226
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031276553.1 → XP_031132413.1  transcription factor MYC1

    Conserved Domains (2) summary
    pfam14215
    Location:26 → 201
    bHLH-MYC_N; bHLH-MYC and R2R3-MYB transcription factors N-terminal
    cd11449
    Location:278 → 350
    bHLH_AtAIB_like; basic helix-loop-helix (bHLH) domain found in Arabidopsis thaliana protein ABA-INDUCIBLE bHLH-TYPE (AIB) and similar proteins
Nucleotide Protein
Heading Accession and Version

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