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PSMD6 proteasome 26S subunit, non-ATPase 6 [ Corvus moneduloides (New Caledonian crow) ]

Gene ID: 116449650, updated on 3-Aug-2024

Summary

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Gene symbol
PSMD6
Gene description
proteasome 26S subunit, non-ATPase 6
See related
Ensembl:ENSCMUG00005017001
Gene type
protein coding
RefSeq status
MODEL
Organism
Corvus moneduloides
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Corvoidea; Corvidae; Corvus
Orthologs
human mouse all
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Genomic context

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See PSMD6 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
8
Annotation release Status Assembly Chr Location
100 current bCorMon1.pri (GCF_009650955.1) 11 NC_045486.1 (7675297..7682066)

Chromosome 11 - NC_045486.1Genomic Context describing neighboring genes Neighboring gene ADAM metallopeptidase with thrombospondin type 1 motif 9 Neighboring gene uncharacterized LOC116449506 Neighboring gene prickle planar cell polarity protein 2 Neighboring gene ataxin 7 Neighboring gene uncharacterized LOC116449653 Neighboring gene THO complex subunit 7

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_045486.1 Chromosome 11 Reference bCorMon1.pri

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in proteasome-mediated ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of proteasome regulatory particle IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
26S proteasome non-ATPase regulatory subunit 6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Corvus moneduloides Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bCorMon1.pri

Genomic

  1. NC_045486.1 Reference bCorMon1.pri

    Range
    7675297..7682066
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_032121371.1 → XP_031977262.1  26S proteasome non-ATPase regulatory subunit 6

    UniProtKB/TrEMBL
    A0A851VYL0, A0A8C3EXF3
    Related
    ENSCMUP00005027938.1, ENSCMUT00005029877.1
    Conserved Domains (1) summary
    COG5187
    Location:15 → 382
    RPN7; 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Nucleotide Protein
Heading Accession and Version

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