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LOC116449660 semaphorin-3D-like [ Corvus moneduloides (New Caledonian crow) ]

Gene ID: 116449660, updated on 3-Aug-2024

Summary

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Gene symbol
LOC116449660
Gene description
semaphorin-3D-like
See related
Ensembl:ENSCMUG00005012359
Gene type
protein coding
RefSeq status
MODEL
Organism
Corvus moneduloides
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Corvoidea; Corvidae; Corvus
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Genomic context

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See LOC116449660 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
18
Annotation release Status Assembly Chr Location
100 current bCorMon1.pri (GCF_009650955.1) 11 NC_045486.1 (17855473..17879038, complement)

Chromosome 11 - NC_045486.1Genomic Context describing neighboring genes Neighboring gene RNA binding motif protein 15B Neighboring gene DDB1 and CUL4 associated factor 1 Neighboring gene RAD54 like 2 Neighboring gene RNA binding motif protein 6 Neighboring gene MON1 homolog A, secretory trafficking associated

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_045486.1 Chromosome 11 Reference bCorMon1.pri

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables chemorepellent activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables semaphorin receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative chemotaxis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of axon extension involved in axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in neural crest cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in semaphorin-plexin signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
semaphorin-3D-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Corvus moneduloides Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bCorMon1.pri

Genomic

  1. NC_045486.1 Reference bCorMon1.pri

    Range
    17855473..17879038 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_032121381.1 → XP_031977272.1  semaphorin-3D-like isoform X1

    Conserved Domains (3) summary
    smart00423
    Location:528 → 554
    PSI; domain found in Plexins, Semaphorins and Integrins
    cd05871
    Location:610 → 701
    Ig_Sema3; Immunoglobulin (Ig)-like domain of class III semaphorin Sema3
    cl15693
    Location:52 → 529
    Sema; The Sema domain, a protein interacting module, of semaphorins and plexins

  2. XM_032121382.1 → XP_031977273.1  semaphorin-3D-like isoform X2

    UniProtKB/TrEMBL
    A0A851W7P8, A0A8C3D5A7, A0A8U7NL69
    Related
    ENSCMUP00005020042.1, ENSCMUT00005021452.1
    Conserved Domains (3) summary
    smart00423
    Location:528 → 554
    PSI; domain found in Plexins, Semaphorins and Integrins
    cd05871
    Location:587 → 678
    Ig_Sema3; Immunoglobulin (Ig)-like domain of class III semaphorin Sema3
    cl15693
    Location:52 → 529
    Sema; The Sema domain, a protein interacting module, of semaphorins and plexins
Nucleotide Protein
Heading Accession and Version

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