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LOC116456089 zinc finger protein 385C-like [ Corvus moneduloides (New Caledonian crow) ]

Gene ID: 116456089, updated on 3-Aug-2024

Summary

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Gene symbol
LOC116456089
Gene description
zinc finger protein 385C-like
See related
Ensembl:ENSCMUG00005013422
Gene type
protein coding
RefSeq status
MODEL
Organism
Corvus moneduloides
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Corvoidea; Corvidae; Corvus
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Genomic context

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See LOC116456089 in Genome Data Viewer
Location:
chromosome: 26
Exon count:
15
Annotation release Status Assembly Chr Location
100 current bCorMon1.pri (GCF_009650955.1) 26 NC_045501.1 (2901454..2959919, complement)

Chromosome 26 - NC_045501.1Genomic Context describing neighboring genes Neighboring gene DnaJ heat shock protein family (Hsp40) member C7 Neighboring gene NFKB inhibitor interacting Ras like 2 Neighboring gene DExH-box helicase 58 Neighboring gene lysine acetyltransferase 2A

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_045501.1 Chromosome 26 Reference bCorMon1.pri

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transmembrane protein C17orf113-like; zinc finger protein 385C-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Corvus moneduloides Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bCorMon1.pri

Genomic

  1. NC_045501.1 Reference bCorMon1.pri

    Range
    2901454..2959919 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_032134592.1 → XP_031990483.1  zinc finger protein 385C-like isoform X2

    UniProtKB/TrEMBL
    A0A8C3DGI6, A0A8U7NQN6
    Related
    ENSCMUP00005021718.1, ENSCMUT00005023246.1
    Conserved Domains (2) summary
    sd00020
    Location:329 → 394
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam12874
    Location:393 → 417
    zf-met; Zinc-finger of C2H2 type

  2. XM_032134594.1 → XP_031990485.1  zinc finger protein 385C-like isoform X3

    UniProtKB/TrEMBL
    A0A8C3DGI6, A0A8U7NQN6
    Related
    ENSCMUP00005021730.1, ENSCMUT00005023258.1
    Conserved Domains (2) summary
    sd00020
    Location:329 → 394
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam12874
    Location:393 → 417
    zf-met; Zinc-finger of C2H2 type

  3. XM_032134596.1 → XP_031990487.1  zinc finger protein 385C-like isoform X5

    UniProtKB/TrEMBL
    A0A8C3DGI0
    Conserved Domains (2) summary
    sd00020
    Location:246 → 311
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam12874
    Location:310 → 334
    zf-met; Zinc-finger of C2H2 type

  4. XM_032134595.1 → XP_031990486.1  zinc finger protein 385C-like isoform X4

    UniProtKB/TrEMBL
    A0A8C3DGI0
    Conserved Domains (2) summary
    sd00020
    Location:298 → 363
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam12874
    Location:362 → 386
    zf-met; Zinc-finger of C2H2 type

  5. XM_032134597.1 → XP_031990488.1  zinc finger protein 385C-like isoform X6

    UniProtKB/TrEMBL
    A0A8C3DGI0
    Related
    ENSCMUP00005021736.1, ENSCMUT00005023264.1
    Conserved Domains (2) summary
    sd00020
    Location:237 → 302
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam12874
    Location:301 → 325
    zf-met; Zinc-finger of C2H2 type

  6. XM_032134598.1 → XP_031990489.1  zinc finger protein 385C-like isoform X7

    UniProtKB/TrEMBL
    A0A8C3DGI0
    Conserved Domains (2) summary
    sd00020
    Location:186 → 251
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam12874
    Location:250 → 274
    zf-met; Zinc-finger of C2H2 type

  7. XM_032134591.1 → XP_031990482.1  transmembrane protein C17orf113-like isoform X1

    UniProtKB/TrEMBL
    A0A8C3DK26, A0A8U7NS76, A0A8U7NSW6
    Related
    ENSCMUP00005021764.1, ENSCMUT00005023292.1
    Conserved Domains (1) summary
    smart00597
    Location:20 → 107
    ZnF_TTF; zinc finger in transposases and transcription factors

  8. XM_032134590.1 → XP_031990481.1  transmembrane protein C17orf113-like isoform X1

    UniProtKB/TrEMBL
    A0A8C3DK26, A0A8U7NS76, A0A8U7NSW6
    Conserved Domains (1) summary
    smart00597
    Location:20 → 107
    ZnF_TTF; zinc finger in transposases and transcription factors
Nucleotide Protein
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