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LOC116616126 T-box transcription factor T homolog 1 [ Nematostella vectensis (starlet sea anemone) ]

Gene ID: 116616126, updated on 30-Nov-2023

Summary

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Gene symbol
LOC116616126
Gene description
T-box transcription factor T homolog 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Nematostella vectensis
Lineage
Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; Edwardsiidae; Nematostella
Also known as
Bra1
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Genomic context

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See LOC116616126 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
7
Annotation release Status Assembly Chr Location
101 current jaNemVect1.1 (GCF_932526225.1) 2 NC_064035.1 (1015147..1021296)
100 previous assembly ASM20922v1 (GCF_000209225.1) Unplaced Scaffold NW_001834277.1 (182314..188477)

Chromosome 2 - NC_064035.1Genomic Context describing neighboring genes Neighboring gene ATP-citrate synthase Neighboring gene uncharacterized LOC116616125 Neighboring gene uncharacterized LOC125560508 Neighboring gene vesicle transport protein USE1 Neighboring gene uncharacterized protein K02A2.6-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The ancestral role of Brachyury: expression of NemBra1 in the basal cnidarian Nematostella vectensis (Anthozoa). Scholz CB, et al. Dev Genes Evol, 2003 Jan. PMID 12536320

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell fate specification IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart morphogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mesoderm formation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
T-box transcription factor T homolog 1
Names
Brachyury-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nematostella vectensis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference jaNemVect1.1

Genomic

  1. NC_064035.1 Reference jaNemVect1.1

    Range
    1015147..1021296
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_032378021.2 → XP_032233912.1  T-box transcription factor T homolog 1 isoform X1

    Conserved Domains (1) summary
    cd20192
    Location:42 → 222
    T-box_TBXT_TBX19-like; DNA-binding domain of T-box transcription factor T, T-box transcription factor 19 and related T-box proteins

  2. XM_032378022.2 → XP_032233913.1  T-box transcription factor T homolog 1 isoform X2

    UniProtKB/TrEMBL
    Q86RA8
    Conserved Domains (1) summary
    cd20192
    Location:42 → 221
    T-box_TBXT_TBX19-like; DNA-binding domain of T-box transcription factor T, T-box transcription factor 19 and related T-box proteins
Nucleotide Protein
Heading Accession and Version

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