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Derpc DERPC proline and glycine rich nuclear protein [ Mus musculus (house mouse) ]

Gene ID: 116621581, updated on 2-Nov-2024

Summary

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Official Symbol
Derpcprovided by MGI
Official Full Name
DERPC proline and glycine rich nuclear proteinprovided by MGI
Primary source
MGI:MGI:6303050
See related
Ensembl:ENSMUSG00000117748 AllianceGenome:MGI:6303050
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm50241
Summary
Predicted to be located in nucleoplasm. Orthologous to human DERPC (DERPC proline and glycine rich nuclear protein). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
human all
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Genomic context

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See Derpc in Genome Data Viewer
Location:
8 D3; 8
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 8 NC_000074.7 (107610495..107620225, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 8 NC_000074.6 (106883863..106893593, complement)

Chromosome 8 - NC_000074.7Genomic Context describing neighboring genes Neighboring gene transport and golgi organization 6 Neighboring gene predicted gene, 34197 Neighboring gene STARR-seq mESC enhancer starr_22582 Neighboring gene predicted gene, 53451 Neighboring gene ES cell cis-regulatory motif 8a Neighboring gene hyaluronan synthase 3 Neighboring gene STARR-seq mESC enhancer starr_22583 Neighboring gene CTF8, chromosome transmission fidelity factor 8 Neighboring gene UTP4 small subunit processome component Neighboring gene ribosomal protein L10, pseudogene 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Immunoaffinity enrichment and mass spectrometry analysis of protein methylation. Guo A, et al. Mol Cell Proteomics, 2014 Jan. PMID 24129315, Free PMC Article
  2. Lineage-specific biology revealed by a finished genome assembly of the mouse. Church DM, et al. PLoS Biol, 2009 May 5. PMID 19468303, Free PMC Article
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). Gerhard DS, et al. Genome Res, 2004 Oct. PMID 15489334, Free PMC Article
  4. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  5. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636

See all (11) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC28104

Gene Ontology Provided by MGI

Component Evidence Code Pubs
located_in nucleoplasm ISO
Inferred from Sequence Orthology
more info
  

General protein information

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Preferred Names
decreased expression in renal and prostate cancer protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001378376.1 → NP_001365305.1  decreased expression in renal and prostate cancer protein

    Status: VALIDATED

    Source sequence(s)
    AC123864
    UniProtKB/Swiss-Prot
    P0CG14
    Conserved Domains (1) summary
    PHA03247
    Location:56 → 478
    PHA03247; large tegument protein UL36; Provisional

  2. NM_001378377.1 → NP_001365306.1  decreased expression in renal and prostate cancer protein

    Status: VALIDATED

    Source sequence(s)
    AC123864
    UniProtKB/Swiss-Prot
    P0CG14
    Conserved Domains (1) summary
    PHA03247
    Location:56 → 478
    PHA03247; large tegument protein UL36; Provisional

  3. NM_001378378.1 → NP_001365307.1  decreased expression in renal and prostate cancer protein

    Status: VALIDATED

    Source sequence(s)
    AC123864
    UniProtKB/Swiss-Prot
    P0CG14
    Related
    ENSMUSP00000129823.2, ENSMUST00000169312.2
    Conserved Domains (1) summary
    PHA03247
    Location:56 → 478
    PHA03247; large tegument protein UL36; Provisional

  4. NM_001378379.1 → NP_001365308.1  decreased expression in renal and prostate cancer protein

    Status: VALIDATED

    Source sequence(s)
    AC123864
    UniProtKB/Swiss-Prot
    P0CG14
    Conserved Domains (1) summary
    PHA03247
    Location:56 → 478
    PHA03247; large tegument protein UL36; Provisional

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000074.7 Reference GRCm39 C57BL/6J

    Range
    107610495..107620225 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P0CG14.1 GenPept UniProtKB/Swiss-Prot:P0CG14

Gene LinkOut

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Molecular Biology Databases
Research Materials