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Derpc DERPC proline and glycine rich nuclear protein [ Rattus norvegicus (Norway rat) ]

Gene ID: 116621582, updated on 2-Nov-2024

Summary

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Symbol
Derpcprovided by RGD
Full Name
DERPC proline and glycine rich nuclear proteinprovided by RGD
Primary source
RGD:21079726
See related
EnsemblRapid:ENSRNOG00000047246 AllianceGenome:RGD:21079726
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Predicted to be located in nucleoplasm. Orthologous to human DERPC (DERPC proline and glycine rich nuclear protein). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
human mouse all
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Genomic context

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See Derpc in Genome Data Viewer
Location:
19q12
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 19 NC_086037.1 (51692005..51702076, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 19 NC_051354.1 (34782234..34792306, complement)

Chromosome 19 - NC_086037.1Genomic Context describing neighboring genes Neighboring gene transport and golgi organization 6 homolog Neighboring gene hyaluronan synthase 3 Neighboring gene chromosome transmission fidelity factor 8 Neighboring gene UTP4 small subunit processome component Neighboring gene syntrophin, beta 2 Neighboring gene U6 spliceosomal RNA Neighboring gene uncharacterized LOC134483350 Neighboring gene vacuolar protein sorting 4 homolog A

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues. Lundby A, et al. Nat Commun, 2012 Jun 6. PMID 22673903, Free PMC Article
  2. Gene and alternative splicing annotation with AIR. Florea L, et al. Genome Res, 2005 Jan. PMID 15632090, Free PMC Article
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). Gerhard DS, et al. Genome Res, 2004 Oct. PMID 15489334, Free PMC Article
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC188691

Gene Ontology Provided by RGD

Component Evidence Code Pubs
located_in nucleoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in nucleoplasm ISO
Inferred from Sequence Orthology
more info
  

General protein information

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Preferred Names
decreased expression in renal and prostate cancer protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001378380.1 → NP_001365309.1  decreased expression in renal and prostate cancer protein

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000019
    UniProtKB/Swiss-Prot
    B2RYL1
    Related
    ENSRNOP00000063969.3, ENSRNOT00000070822.3
    Conserved Domains (1) summary
    PHA03247
    Location:63 → 478
    PHA03247; large tegument protein UL36; Provisional

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086037.1 Reference GRCr8

    Range
    51692005..51702076 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
B2RYL1.1 GenPept UniProtKB/Swiss-Prot:B2RYL1

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.