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SEC24C SEC24 homolog C, COPII coat complex component [ Chiroxiphia lanceolata (lance-tailed manakin) ]

Gene ID: 116790619, updated on 3-Aug-2024

Summary

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Gene symbol
SEC24C
Gene description
SEC24 homolog C, COPII coat complex component
See related
EnsemblRapid:ENSCLNG00000010762
Gene type
protein coding
RefSeq status
MODEL
Organism
Chiroxiphia lanceolata
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Pipridae; Chiroxiphia
Orthologs
human mouse all
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Genomic context

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See SEC24C in Genome Data Viewer
Location:
chromosome: 8
Exon count:
28
Annotation release Status Assembly Chr Location
100 current bChiLan1.pri (GCF_009829145.1) 8 NC_045644.1 (21491526..21530371)

Chromosome 8 - NC_045644.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC116790622 Neighboring gene myozenin 1 Neighboring gene synaptopodin 2 like Neighboring gene fucosyltransferase 11 Neighboring gene coiled-coil-helix-coiled-coil-helix domain containing 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_045644.1 Chromosome 8 Reference bChiLan1.pri

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables SNARE binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in COPII-coated vesicle cargo loading IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intracellular protein transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of COPII vesicle coat IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum exit site IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein transport protein Sec24C

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Chiroxiphia lanceolata Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bChiLan1.pri

Genomic

  1. NC_045644.1 Reference bChiLan1.pri

    Range
    21491526..21530371
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_032695737.1 → XP_032551628.1  protein transport protein Sec24C isoform X1

    Related
    ENSCLNP00000015339.1, ENSCLNT00000016234.1
    Conserved Domains (2) summary
    PHA03247
    Location:47 → 442
    PHA03247; large tegument protein UL36; Provisional
    COG5028
    Location:395 → 1172
    COG5028; Vesicle coat complex COPII, subunit SEC24/subunit SFB2/subunit SFB3 [Intracellular trafficking and secretion]

  2. XM_032695742.1 → XP_032551633.1  protein transport protein Sec24C isoform X3

    Related
    ENSCLNP00000015343.1, ENSCLNT00000016238.1
    Conserved Domains (2) summary
    PHA03247
    Location:11 → 413
    PHA03247; large tegument protein UL36; Provisional
    COG5028
    Location:366 → 1143
    COG5028; Vesicle coat complex COPII, subunit SEC24/subunit SFB2/subunit SFB3 [Intracellular trafficking and secretion]

  3. XM_032695744.1 → XP_032551635.1  protein transport protein Sec24C isoform X4

    Related
    ENSCLNP00000015345.1, ENSCLNT00000016240.1
    Conserved Domains (2) summary
    PHA03247
    Location:11 → 292
    PHA03247; large tegument protein UL36; Provisional
    COG5028
    Location:267 → 1120
    COG5028; Vesicle coat complex COPII, subunit SEC24/subunit SFB2/subunit SFB3 [Intracellular trafficking and secretion]

  4. XM_032695741.1 → XP_032551632.1  protein transport protein Sec24C isoform X2

    Conserved Domains (2) summary
    PHA03247
    Location:2 → 325
    PHA03247; large tegument protein UL36; Provisional
    COG5028
    Location:296 → 1149
    COG5028; Vesicle coat complex COPII, subunit SEC24/subunit SFB2/subunit SFB3 [Intracellular trafficking and secretion]

  5. XM_032695738.1 → XP_032551629.1  protein transport protein Sec24C isoform X1

    Conserved Domains (2) summary
    PHA03247
    Location:47 → 442
    PHA03247; large tegument protein UL36; Provisional
    COG5028
    Location:395 → 1172
    COG5028; Vesicle coat complex COPII, subunit SEC24/subunit SFB2/subunit SFB3 [Intracellular trafficking and secretion]

  6. XM_032695740.1 → XP_032551631.1  protein transport protein Sec24C isoform X1

    Conserved Domains (2) summary
    PHA03247
    Location:47 → 442
    PHA03247; large tegument protein UL36; Provisional
    COG5028
    Location:395 → 1172
    COG5028; Vesicle coat complex COPII, subunit SEC24/subunit SFB2/subunit SFB3 [Intracellular trafficking and secretion]

  7. XM_032695739.1 → XP_032551630.1  protein transport protein Sec24C isoform X1

    Conserved Domains (2) summary
    PHA03247
    Location:47 → 442
    PHA03247; large tegument protein UL36; Provisional
    COG5028
    Location:395 → 1172
    COG5028; Vesicle coat complex COPII, subunit SEC24/subunit SFB2/subunit SFB3 [Intracellular trafficking and secretion]
Nucleotide Protein
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