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A1CF APOBEC1 complementation factor [ Chiroxiphia lanceolata (lance-tailed manakin) ]

Gene ID: 116790624, updated on 3-Aug-2024

Summary

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Gene symbol
A1CF
Gene description
APOBEC1 complementation factor
See related
EnsemblRapid:ENSCLNG00000001473
Gene type
protein coding
RefSeq status
MODEL
Organism
Chiroxiphia lanceolata
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Pipridae; Chiroxiphia
Orthologs
human mouse all
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Genomic context

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See A1CF in Genome Data Viewer
Location:
chromosome: 8
Exon count:
12
Annotation release Status Assembly Chr Location
100 current bChiLan1.pri (GCF_009829145.1) 8 NC_045644.1 (36537037..36565922)

Chromosome 8 - NC_045644.1Genomic Context describing neighboring genes Neighboring gene protein kinase cGMP-dependent 1 Neighboring gene dickkopf WNT signaling pathway inhibitor 1 Neighboring gene putative neutral ceramidase C Neighboring gene sphingomyelin synthase 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_045644.1 Chromosome 8 Reference bChiLan1.pri

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
APOBEC1 complementation factor

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Chiroxiphia lanceolata Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bChiLan1.pri

Genomic

  1. NC_045644.1 Reference bChiLan1.pri

    Range
    36537037..36565922
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_032695748.1 → XP_032551639.1  APOBEC1 complementation factor isoform X1

    Conserved Domains (1) summary
    TIGR01648
    Location:2 → 588
    hnRNP-R-Q; heterogeneous nuclear ribonucleoprotein R, Q family

  2. XM_032695752.1 → XP_032551643.1  APOBEC1 complementation factor isoform X4

    Conserved Domains (1) summary
    TIGR01648
    Location:1 → 504
    hnRNP-R-Q; heterogeneous nuclear ribonucleoprotein R, Q family

  3. XM_032695749.1 → XP_032551640.1  APOBEC1 complementation factor isoform X2

    Related
    ENSCLNP00000002003.1, ENSCLNT00000002113.1
    Conserved Domains (1) summary
    TIGR01648
    Location:2 → 580
    hnRNP-R-Q; heterogeneous nuclear ribonucleoprotein R, Q family

  4. XM_032695750.1 → XP_032551641.1  APOBEC1 complementation factor isoform X3

    Conserved Domains (1) summary
    TIGR01648
    Location:2 → 539
    hnRNP-R-Q; heterogeneous nuclear ribonucleoprotein R, Q family
Nucleotide Protein
Heading Accession and Version

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