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SGMS1 sphingomyelin synthase 1 [ Chiroxiphia lanceolata (lance-tailed manakin) ]

Gene ID: 116790625, updated on 3-Aug-2024

Summary

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Gene symbol
SGMS1
Gene description
sphingomyelin synthase 1
See related
EnsemblRapid:ENSCLNG00000001502
Gene type
protein coding
RefSeq status
MODEL
Organism
Chiroxiphia lanceolata
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Pipridae; Chiroxiphia
Orthologs
human mouse all
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Genomic context

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See SGMS1 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
12
Annotation release Status Assembly Chr Location
100 current bChiLan1.pri (GCF_009829145.1) 8 NC_045644.1 (36594314..36679717, complement)

Chromosome 8 - NC_045644.1Genomic Context describing neighboring genes Neighboring gene APOBEC1 complementation factor Neighboring gene putative neutral ceramidase C Neighboring gene uncharacterized LOC116789979 Neighboring gene uncharacterized LOC116789978

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_045644.1 Chromosome 8 Reference bChiLan1.pri

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ceramide cholinephosphotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sphingomyelin synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ceramide biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sphingomyelin biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
phosphatidylcholine:ceramide cholinephosphotransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Chiroxiphia lanceolata Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bChiLan1.pri

Genomic

  1. NC_045644.1 Reference bChiLan1.pri

    Range
    36594314..36679717 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_032695758.1 → XP_032551649.1  phosphatidylcholine:ceramide cholinephosphotransferase 1

    Conserved Domains (2) summary
    cd09514
    Location:1 → 72
    SAM_SGMS1; SAM domain of sphingomyelin synthase
    pfam14360
    Location:272 → 345
    PAP2_C; PAP2 superfamily C-terminal

  2. XM_032695754.1 → XP_032551645.1  phosphatidylcholine:ceramide cholinephosphotransferase 1

    Related
    ENSCLNP00000002042.1, ENSCLNT00000002158.1
    Conserved Domains (2) summary
    cd09514
    Location:1 → 72
    SAM_SGMS1; SAM domain of sphingomyelin synthase
    pfam14360
    Location:272 → 345
    PAP2_C; PAP2 superfamily C-terminal

  3. XM_032695756.1 → XP_032551647.1  phosphatidylcholine:ceramide cholinephosphotransferase 1

    Conserved Domains (2) summary
    cd09514
    Location:1 → 72
    SAM_SGMS1; SAM domain of sphingomyelin synthase
    pfam14360
    Location:272 → 345
    PAP2_C; PAP2 superfamily C-terminal

  4. XM_032695753.1 → XP_032551644.1  phosphatidylcholine:ceramide cholinephosphotransferase 1

    Conserved Domains (2) summary
    cd09514
    Location:1 → 72
    SAM_SGMS1; SAM domain of sphingomyelin synthase
    pfam14360
    Location:272 → 345
    PAP2_C; PAP2 superfamily C-terminal

  5. XM_032695761.1 → XP_032551652.1  phosphatidylcholine:ceramide cholinephosphotransferase 1

    Conserved Domains (2) summary
    cd09514
    Location:1 → 72
    SAM_SGMS1; SAM domain of sphingomyelin synthase
    pfam14360
    Location:272 → 345
    PAP2_C; PAP2 superfamily C-terminal

  6. XM_032695757.1 → XP_032551648.1  phosphatidylcholine:ceramide cholinephosphotransferase 1

    Conserved Domains (2) summary
    cd09514
    Location:1 → 72
    SAM_SGMS1; SAM domain of sphingomyelin synthase
    pfam14360
    Location:272 → 345
    PAP2_C; PAP2 superfamily C-terminal

  7. XM_032695755.1 → XP_032551646.1  phosphatidylcholine:ceramide cholinephosphotransferase 1

    Conserved Domains (2) summary
    cd09514
    Location:1 → 72
    SAM_SGMS1; SAM domain of sphingomyelin synthase
    pfam14360
    Location:272 → 345
    PAP2_C; PAP2 superfamily C-terminal

  8. XM_032695759.1 → XP_032551650.1  phosphatidylcholine:ceramide cholinephosphotransferase 1

    Conserved Domains (2) summary
    cd09514
    Location:1 → 72
    SAM_SGMS1; SAM domain of sphingomyelin synthase
    pfam14360
    Location:272 → 345
    PAP2_C; PAP2 superfamily C-terminal

  9. XM_032695760.1 → XP_032551651.1  phosphatidylcholine:ceramide cholinephosphotransferase 1

    Conserved Domains (2) summary
    cd09514
    Location:1 → 72
    SAM_SGMS1; SAM domain of sphingomyelin synthase
    pfam14360
    Location:272 → 345
    PAP2_C; PAP2 superfamily C-terminal
Nucleotide Protein
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