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SEPSECS Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthase [ Chelonoidis abingdonii (Abingdon island giant tortoise) ]

Gene ID: 116840166, updated on 18-Mar-2024

Summary

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Gene symbol
SEPSECS
Gene description
Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthase
See related
Ensembl:ENSCABG00000002892
Gene type
protein coding
RefSeq status
MODEL
Organism
Chelonoidis abingdonii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Testudinoidea; Testudinidae; Chelonoidis
Orthologs
human mouse all
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Genomic context

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See SEPSECS in Genome Data Viewer
Location:
chromosome: Un
Exon count:
11
Annotation release Status Assembly Chr Location
100 current ASM359739v1 (GCF_003597395.1) Unplaced Scaffold NW_022646852.1 (939457..993191)

NW_022646852.1Genomic Context describing neighboring genes Neighboring gene zinc finger CCHC-type containing 4 Neighboring gene phosphatidylinositol 4-kinase type 2 beta Neighboring gene leucine rich repeat LGI family member 2 Neighboring gene coiled-coil domain containing 149

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_022646852 Unplaced Scaffold Reference ASM359739v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables O-phosphoseryl-tRNA(Sec) selenium transferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables tRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in conversion of seryl-tRNAsec to selenocys-tRNAsec IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in selenocysteine incorporation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
O-phosphoseryl-tRNA(Sec) selenium transferase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Chelonoidis abingdonii Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM359739v1

Genomic

  1. NW_022646852.1 Reference ASM359739v1

    Range
    939457..993191
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_032806602.1 → XP_032662493.1  O-phosphoseryl-tRNA(Sec) selenium transferase isoform X1

    UniProtKB/TrEMBL
    A0A8C0G4W1
    Related
    ENSCABP00000003829.1, ENSCABT00000004155.1
    Conserved Domains (1) summary
    TIGR03531
    Location:12 → 457
    selenium_SpcS; O-phosphoseryl-tRNA(Sec) selenium transferase

  2. XM_032806603.1 → XP_032662494.1  O-phosphoseryl-tRNA(Sec) selenium transferase isoform X2

    Conserved Domains (1) summary
    TIGR03531
    Location:10 → 378
    selenium_SpcS; O-phosphoseryl-tRNA(Sec) selenium transferase
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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