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LGI2 leucine rich repeat LGI family member 2 [ Chelonoidis abingdonii (Abingdon island giant tortoise) ]

Gene ID: 116840182, updated on 18-Mar-2024

Summary

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Gene symbol
LGI2
Gene description
leucine rich repeat LGI family member 2
See related
Ensembl:ENSCABG00000002903
Gene type
protein coding
RefSeq status
MODEL
Organism
Chelonoidis abingdonii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Testudinoidea; Testudinidae; Chelonoidis
Orthologs
human mouse all
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Genomic context

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See LGI2 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
8
Annotation release Status Assembly Chr Location
100 current ASM359739v1 (GCF_003597395.1) Unplaced Scaffold NW_022646852.1 (1067104..1095058)

NW_022646852.1Genomic Context describing neighboring genes Neighboring gene phosphatidylinositol 4-kinase type 2 beta Neighboring gene Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthase Neighboring gene coiled-coil domain containing 149 Neighboring gene superoxide dismutase 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_022646852 Unplaced Scaffold Reference ASM359739v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in inhibitory synapse assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
leucine-rich repeat LGI family member 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Chelonoidis abingdonii Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM359739v1

Genomic

  1. NW_022646852.1 Reference ASM359739v1

    Range
    1067104..1095058
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_032806625.1 → XP_032662516.1  leucine-rich repeat LGI family member 2 isoform X1

    UniProtKB/TrEMBL
    A0A8C0ILP6
    Conserved Domains (5) summary
    TIGR00864
    Location:140 → 215
    PCC; polycystin cation channel protein
    sd00031
    Location:111 → 134
    LRR_1; leucine-rich repeat [structural motif]
    sd00033
    Location:65 → 86
    LRR_RI; leucine-rich repeat [structural motif]
    pfam03736
    Location:313 → 357
    EPTP; EPTP domain
    pfam13855
    Location:110 → 169
    LRR_8; Leucine rich repeat

  2. XM_032806626.1 → XP_032662517.1  leucine-rich repeat LGI family member 2 isoform X2

    UniProtKB/TrEMBL
    A0A8C0ILP6
    Related
    ENSCABP00000003954.1, ENSCABT00000004289.1
    Conserved Domains (5) summary
    TIGR00864
    Location:140 → 215
    PCC; polycystin cation channel protein
    sd00031
    Location:111 → 134
    LRR_1; leucine-rich repeat [structural motif]
    sd00033
    Location:65 → 86
    LRR_RI; leucine-rich repeat [structural motif]
    pfam03736
    Location:266 → 304
    EPTP; EPTP domain
    pfam13855
    Location:110 → 169
    LRR_8; Leucine rich repeat
Nucleotide Protein
Heading Accession and Version

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