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Idh isocitrate dehydrogenase [NADP] cytoplasmic [ Daphnia magna ]

Gene ID: 116918845, updated on 3-Jul-2024

Summary

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Gene symbol
Idh
Gene description
isocitrate dehydrogenase [NADP] cytoplasmic
See related
EnsemblRapid:LOC116918845
Gene type
protein coding
RefSeq status
MODEL
Organism
Daphnia magna
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Crustacea; Branchiopoda; Diplostraca; Cladocera; Anomopoda; Daphniidae; Daphnia
Orthologs
fruit fly all
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Genomic context

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See Idh in Genome Data Viewer
Location:
chromosome: LG3
Exon count:
10
Annotation release Status Assembly LG Location
101 current ASM2063170v1.1 (GCF_020631705.1) LG3 NC_059184.1 (7016449..7019114)
100 previous assembly ASM399081v1 (GCF_003990815.1) LG3 NC_046176.1 (8620495..8623161, complement)

Linkage Group LG3 - NC_059184.1Genomic Context describing neighboring genes Neighboring gene ubiquitin-like activating enzyme 1 Neighboring gene ubiquitin carboxyl-terminal hydrolase 28 Neighboring gene phenylalanine--tRNA ligase alpha subunit Neighboring gene protein YIPF1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables NAD binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables isocitrate dehydrogenase (NADP+) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables magnesium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in isocitrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in peroxisome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
isocitrate dehydrogenase [NADP] cytoplasmic
Names
Isocitrate dehydrogenase [NADP], mitochondrial

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Daphnia magna Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2063170v1.1 Primary Assembly

Genomic

  1. NC_059184.1 Reference ASM2063170v1.1 Primary Assembly

    Range
    7016449..7019114
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_032924632.2 → XP_032780523.1  isocitrate dehydrogenase [NADP] cytoplasmic

    UniProtKB/TrEMBL
    A0A164KX34
    Related
    XP_032780523.1, XM_032924632.2
    Conserved Domains (1) summary
    PTZ00435
    Location:1 → 408
    PTZ00435; isocitrate dehydrogenase; Provisional
Nucleotide Protein
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Molecular Biology Databases