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CHMP2B Charged multivesicular body protein 2b [ Daphnia magna ]

Gene ID: 116925479, updated on 3-Jul-2024

Summary

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Gene symbol
CHMP2B
Gene description
Charged multivesicular body protein 2b
See related
EnsemblRapid:LOC116925479
Gene type
protein coding
RefSeq status
MODEL
Organism
Daphnia magna
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Crustacea; Branchiopoda; Diplostraca; Cladocera; Anomopoda; Daphniidae; Daphnia
Orthologs
fruit fly all
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Genomic context

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See CHMP2B in Genome Data Viewer
Location:
chromosome: LG1
Exon count:
7
Annotation release Status Assembly LG Location
101 current ASM2063170v1.1 (GCF_020631705.1) LG1 NC_059182.1 (2586437..2588262, complement)
100 previous assembly ASM399081v1 (GCF_003990815.1) LG1 NC_046174.1 (2361390..2363217, complement)

Linkage Group LG1 - NC_059182.1Genomic Context describing neighboring genes Neighboring gene pseudouridylate synthase 7 homolog Neighboring gene pseudouridylate synthase 7 homolog Neighboring gene cubilin Neighboring gene PUB and ZnF_RBZ domain-containing protein tamozhennic Neighboring gene Cleavage and polyadenylation specificity factor subunit 4 Neighboring gene SMAD specific E3 ubiquitin protein ligase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in endosome transport via multivesicular body sorting pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in late endosome to vacuole transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of ESCRT III complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in multivesicular body IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
charged multivesicular body protein 2b-B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Daphnia magna Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2063170v1.1 Primary Assembly

Genomic

  1. NC_059182.1 Reference ASM2063170v1.1 Primary Assembly

    Range
    2586437..2588262 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_032932509.2 → XP_032788400.1  charged multivesicular body protein 2b-B

    UniProtKB/TrEMBL
    A0A0N8AIK3
    Related
    XP_032788400.1, XM_032932509.2
    Conserved Domains (1) summary
    cl21588
    Location:19 → 186
    Snf7

  2. XM_045180661.1 → XP_045036596.1  charged multivesicular body protein 2b-B

    UniProtKB/TrEMBL
    A0A0N8AIK3
    Related
    XP_045036596.1, XM_045180661.1
    Conserved Domains (1) summary
    cl21588
    Location:19 → 186
    Snf7
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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