U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Surf1 surfeit locus protein 1 [ Daphnia magna ]

Gene ID: 116927950, updated on 3-Jul-2024

Summary

Go to the top of the page Help
Gene symbol
Surf1
Gene description
surfeit locus protein 1
See related
EnsemblRapid:LOC116927950
Gene type
protein coding
RefSeq status
MODEL
Organism
Daphnia magna
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Crustacea; Branchiopoda; Diplostraca; Cladocera; Anomopoda; Daphniidae; Daphnia
Orthologs
fruit fly all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See Surf1 in Genome Data Viewer
Location:
chromosome: LG7
Exon count:
6
Annotation release Status Assembly LG Location
101 current ASM2063170v1.1 (GCF_020631705.1) LG7 NC_059188.1 (12908298..12909612)
100 previous assembly ASM399081v1 (GCF_003990815.1) LG7 NC_046180.1 (9418378..9419691)

Linkage Group LG7 - NC_059188.1Genomic Context describing neighboring genes Neighboring gene venom allergen 3 Neighboring gene uncharacterized LOC116927955 Neighboring gene PBX homeobox extradenticle Neighboring gene thiosulfate sulfurtransferase/rhodanese-like domain-containing protein 3

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in mitochondrial cytochrome c oxidase assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
surfeit locus protein 1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Daphnia magna Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2063170v1.1 Primary Assembly

Genomic

  1. NC_059188.1 Reference ASM2063170v1.1 Primary Assembly

    Range
    12908298..12909612
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_032935003.2 → XP_032790894.1  surfeit locus protein 1

    UniProtKB/TrEMBL
    A0A0P5X7D4
    Related
    XP_032790894.1, XM_032935003.2
    Conserved Domains (1) summary
    cd06662
    Location:50 → 264
    SURF1; SURF1 superfamily. Surf1/Shy1 has been implicated in the posttranslational steps of the biogenesis of the mitochondrially-encoded Cox1 subunit of cytochrome c oxidase (complex IV). Cytochrome c oxidase (complex IV), the terminal electron-transferring ...
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.