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cxcr4a chemokine (C-X-C motif) receptor 4a [ Acipenser ruthenus (sterlet) ]

Gene ID: 117402385, updated on 19-Mar-2024

Summary

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Gene symbol
cxcr4a
Gene description
chemokine (C-X-C motif) receptor 4a
Gene type
protein coding
RefSeq status
MODEL
Organism
Acipenser ruthenus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Chondrostei; Acipenseriformes; Acipenseridae; Acipenser
Also known as
CXCR4
Orthologs
zebrafish all
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Genomic context

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See cxcr4a in Genome Data Viewer
Location:
chromosome: 10
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_08 current fAciRut3.2 maternal haplotype (GCF_902713425.1) 10 NC_081198.1 (44599228..44601762, complement)
101 previous assembly ASM1064508v1 (GCF_010645085.1) 10 NC_048332.1 (41525322..41527407, complement)

Chromosome 10 - NC_081198.1Genomic Context describing neighboring genes Neighboring gene aspartate--tRNA ligase, cytoplasmic Neighboring gene minichromosome maintenance complex component 6 Neighboring gene thrombospondin type-1 domain-containing protein 7B-like Neighboring gene histamine N-methyltransferase-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Cloning of a CXCR4 homolog in chondrostean fish and characterization of the CXCR4-specific structural features. Alabyev BY, et al. Dev Comp Immunol, 2000 Dec. PMID 10906389
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables chemokine receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cytokine binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in G protein-coupled receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in brain development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in chemotaxis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in neurogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
C-X-C chemokine receptor type 4a
Names
CXC chemokine receptor 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_902713425.1-RS_2023_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fAciRut3.2 maternal haplotype Primary Assembly

Genomic

  1. NC_081198.1 Reference fAciRut3.2 maternal haplotype Primary Assembly

    Range
    44599228..44601762 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034003470.3 → XP_033859361.1  C-X-C chemokine receptor type 4a

    UniProtKB/TrEMBL
    A0A444U2Z6, Q9PUA0
    Conserved Domains (1) summary
    cd15179
    Location:42 → 320
    7tmA_CXCR4; CXC chemokine receptor type 4, member of the class A family of seven-transmembrane G protein-coupled receptors
Nucleotide Protein
Heading Accession and Version

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