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samm50l sorting and assembly machinery component 50 homolog, like [ Pseudochaenichthys georgianus (South Georgia icefish) ]

Gene ID: 117468447, updated on 8-Aug-2024

Summary

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Gene symbol
samm50l
Gene description
sorting and assembly machinery component 50 homolog, like
See related
EnsemblRapid:ENSPGEG00000016602
Gene type
protein coding
RefSeq status
MODEL
Organism
Pseudochaenichthys georgianus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Notothenioidei; Channichthyidae; Pseudochaenichthys
Orthologs
zebrafish all
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Genomic context

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See samm50l in Genome Data Viewer
Location:
chromosome: 23
Exon count:
15
Annotation release Status Assembly Chr Location
100 current fPseGeo1.1 (GCF_902827115.1) 23 NC_047525.1 (18111138..18118073)

Chromosome 23 - NC_047525.1Genomic Context describing neighboring genes Neighboring gene metallophosphoesterase domain containing 1 Neighboring gene signal peptide, CUB domain, EGF-like 1 Neighboring gene chromodomain-helicase-DNA-binding protein 8-like Neighboring gene chromodomain-helicase-DNA-binding protein 8-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_047525.1 Chromosome 23 Reference fPseGeo1.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in mitochondrial respiratory chain complex assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein insertion into mitochondrial outer membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of SAM complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in outer membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sorting and assembly machinery component 50 homolog B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pseudochaenichthys georgianus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fPseGeo1.1

Genomic

  1. NC_047525.1 Reference fPseGeo1.1

    Range
    18111138..18118073
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034112569.1 → XP_033968460.1  sorting and assembly machinery component 50 homolog B

    Related
    ENSPGEP00000036708.1, ENSPGET00000038234.1
    Conserved Domains (1) summary
    pfam01103
    Location:152 → 469
    Bac_surface_Ag; Surface antigen
Nucleotide Protein
Heading Accession and Version

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