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LOC117468448 tetraspanin-7-like [ Pseudochaenichthys georgianus (South Georgia icefish) ]

Gene ID: 117468448, updated on 14-Dec-2023

Summary

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Gene symbol
LOC117468448
Gene description
tetraspanin-7-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Pseudochaenichthys georgianus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Notothenioidei; Channichthyidae; Pseudochaenichthys
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Genomic context

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See LOC117468448 in Genome Data Viewer
Location:
chromosome: 23
Exon count:
1
Annotation release Status Assembly Chr Location
100 current fPseGeo1.1 (GCF_902827115.1) 23 NC_047525.1 (10542094..10543182, complement)

Chromosome 23 - NC_047525.1Genomic Context describing neighboring genes Neighboring gene malonyl CoA:ACP acyltransferase (mitochondrial) Neighboring gene DEF6 guanine nucleotide exchange factor c Neighboring gene oocyte zinc finger protein XlCOF6-like Neighboring gene WASH complex subunit 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_047525.1 Chromosome 23 Reference fPseGeo1.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tetraspanin-7-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pseudochaenichthys georgianus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fPseGeo1.1

Genomic

  1. NC_047525.1 Reference fPseGeo1.1

    Range
    10542094..10543182 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034112570.1 → XP_033968461.1  tetraspanin-7-like

    Conserved Domains (1) summary
    cd03161
    Location:205 → 323
    TM4SF2_6_like_LEL; Tetraspanin, extracellular domain or large extracellular loop (LEL), TM4SF2_6_like subfamily. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment ...
Nucleotide Protein
Heading Accession and Version

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