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LOC117468458 sodium- and chloride-dependent betaine transporter-like [ Pseudochaenichthys georgianus (South Georgia icefish) ]

Gene ID: 117468458, updated on 14-Dec-2023

Summary

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Gene symbol
LOC117468458
Gene description
sodium- and chloride-dependent betaine transporter-like
See related
EnsemblRapid:ENSPGEG00000019919
Gene type
protein coding
RefSeq status
MODEL
Organism
Pseudochaenichthys georgianus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Notothenioidei; Channichthyidae; Pseudochaenichthys
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Genomic context

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See LOC117468458 in Genome Data Viewer
Location:
chromosome: 23
Exon count:
16
Annotation release Status Assembly Chr Location
100 current fPseGeo1.1 (GCF_902827115.1) 23 NC_047525.1 (8290279..8309925, complement)

Chromosome 23 - NC_047525.1Genomic Context describing neighboring genes Neighboring gene IQ motif and Sec7 domain ArfGEF 3a Neighboring gene solute carrier family 6 member 1, like Neighboring gene protein mono-ADP-ribosyltransferase PARP11-like Neighboring gene protein mono-ADP-ribosyltransferase PARP11

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_047525.1 Chromosome 23 Reference fPseGeo1.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in sodium ion transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sodium- and chloride-dependent betaine transporter-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pseudochaenichthys georgianus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fPseGeo1.1

Genomic

  1. NC_047525.1 Reference fPseGeo1.1

    Range
    8290279..8309925 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034112584.1 → XP_033968475.1  sodium- and chloride-dependent betaine transporter-like isoform X1

    Related
    ENSPGEP00000045015.1, ENSPGET00000046784.1
    Conserved Domains (1) summary
    cd11496
    Location:28 → 585
    SLC6sbd-TauT-like; Na(+)- and Cl(-)-dependent taurine transporter TauT, and related proteins; solute-binding domain

  2. XM_034112585.1 → XP_033968476.1  sodium- and chloride-dependent betaine transporter-like isoform X2

    Conserved Domains (1) summary
    cl00456
    Location:14 → 514
    SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain
Nucleotide Protein
Heading Accession and Version

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